Variant report

Variant	rs4716020
Chromosome Location	chr6:15986282-15986283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15986222..15988865-chr6:15999428..16001838,2	K562	blood:
2	chr6:15905196..15908263-chr6:15984889..15987796,3	K562	blood:
3	chr6:15984580..15986448-chr6:15986489..15989172,2	K562	blood:
4	chr6:15980977..15982793-chr6:15984089..15986958,2	K562	blood:
5	chr6:15980977..15983106-chr6:15984089..15987609,3	K562	blood:
6	chr6:15901497..15903351-chr6:15985477..15987001,2	K562	blood:
7	chr6:15984876..15986448-chr6:15986489..15989397,2	K562	blood:
8	chr6:15985140..15989289-chr6:16126563..16131391,7	K562	blood:
9	chr6:15984163..15986558-chr6:16129136..16130861,2	K562	blood:
10	chr6:15985605..15987862-chr6:16128021..16130791,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10949323	0.85[CHB][hapmap]
rs67091502	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6940301	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs72653739	0.88[ASN][1000 genomes]
rs9349991	0.88[ASN][1000 genomes]
rs9367887	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370849	0.90[CHB][hapmap]
rs9370851	0.88[ASN][1000 genomes]
rs9370852	0.87[ASN][1000 genomes]
rs9370853	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9383097	0.83[ASN][1000 genomes]
rs9396623	0.90[CHB][hapmap]
rs9396626	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464841	0.83[CEU][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15978000-15986400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:15985800-15986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:15985800-15987800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:15986200-15986400	Enhancers	Esophagus	oesophagus
5	chr6:15986200-15986800	Enhancers	GM12878-XiMat	blood
6	chr6:15986200-15987800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:15986200-15987800	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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