Variant report

Variant	rs9464841
Chromosome Location	chr6:15898519-15898520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15892800..15899119-chr6:16126817..16134608,27	K562	blood:
2	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
3	chr6:15898268..15899852-chr6:16266790..16268393,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10085230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10085361	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1040469	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11751544	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11754210	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11755611	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11756689	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11756991	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757470	0.86[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap]
rs16877310	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877316	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2096212	0.86[EUR][1000 genomes]
rs28454020	0.93[EUR][1000 genomes]
rs2876400	0.81[CEU][hapmap]
rs4365933	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4551166	0.97[EUR][1000 genomes]
rs4716020	0.83[CEU][hapmap]
rs56306564	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57309153	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57383866	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57780024	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57857965	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58035103	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58279883	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58436507	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58645956	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58910903	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59037030	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61684483	0.94[EUR][1000 genomes]
rs66519836	1.00[EUR][1000 genomes]
rs66835686	0.95[EUR][1000 genomes]
rs67947458	0.93[EUR][1000 genomes]
rs72823484	0.81[AMR][1000 genomes]
rs72823498	0.81[AMR][1000 genomes]
rs72825609	0.81[AMR][1000 genomes]
rs72825626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825628	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825649	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825654	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825657	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825659	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825660	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825662	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825664	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825669	0.88[EUR][1000 genomes]
rs72825676	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs729821	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs733409	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs73368559	0.93[EUR][1000 genomes]
rs760957	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752521	1.00[CEU][hapmap]
rs808363	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs808365	0.89[EUR][1000 genomes]
rs9367887	0.90[CEU][hapmap]
rs9370853	0.89[CEU][hapmap]
rs9383092	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9476970	1.00[CEU][hapmap]
rs9476971	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9476972	1.00[EUR][1000 genomes]
rs9476973	1.00[EUR][1000 genomes]
rs9476975	0.93[AFR][1000 genomes]
rs9476976	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476977	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476979	0.89[YRI][hapmap]
rs9476980	1.00[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15894400-15903000	Enhancers	Placenta	Placenta
2	chr6:15894600-15901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15895400-15898800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15895800-15898600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:15895800-15899000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:15895800-15899000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:15896000-15898600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:15896000-15899000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:15896000-15899000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:15896200-15899000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:15896600-15898600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:15897000-15898800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:15897200-15898600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:15897200-15899200	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:15897200-15901000	Enhancers	GM12878-XiMat	blood
16	chr6:15897400-15899000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:15897400-15899000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:15897800-15898600	Weak transcription	Pancreas	Pancrea
19	chr6:15897800-15901400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
21	chr6:15898000-15898800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:15898000-15900600	Weak transcription	Fetal Intestine Large	intestine
23	chr6:15898000-15900800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:15898000-15900800	Weak transcription	Fetal Intestine Small	intestine
25	chr6:15898000-15901000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:15898000-15901000	Weak transcription	Liver	Liver
27	chr6:15898000-15901000	Weak transcription	Lung	lung
28	chr6:15898000-15901000	Weak transcription	NHEK	skin
29	chr6:15898000-15901200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:15898000-15901200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:15898000-15901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:15898000-15901400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:15898200-15898600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:15898200-15900600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr6:15898200-15900800	Weak transcription	Adipose Nuclei	Adipose
36	chr6:15898200-15901000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:15898200-15901200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:15898400-15898600	Flanking Active TSS	K562	blood
39	chr6:15898400-15901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:15898400-15902000	Weak transcription	Spleen	Spleen

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