Variant report

Variant	rs73368559
Chromosome Location	chr6:15881900-15881901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15875079..15877964-chr6:15880093..15881980,2	K562	blood:
3	chr6:15880603..15882867-chr6:15885643..15887252,2	K562	blood:
4	chr6:15879420..15881947-chr6:15888551..15890948,2	MCF-7	breast:
5	chr6:15880769..15883178-chr6:16128154..16130774,2	MCF-7	breast:
6	chr6:15879446..15881923-chr6:15881943..15885281,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10085230	0.93[EUR][1000 genomes]
rs10085361	0.93[EUR][1000 genomes]
rs1040469	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11751544	0.93[EUR][1000 genomes]
rs11754210	0.89[EUR][1000 genomes]
rs11755611	0.92[EUR][1000 genomes]
rs11756689	0.90[EUR][1000 genomes]
rs11756991	0.89[EUR][1000 genomes]
rs11757470	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11758001	0.92[EUR][1000 genomes]
rs16877310	0.89[EUR][1000 genomes]
rs16877316	0.89[EUR][1000 genomes]
rs16877348	0.89[EUR][1000 genomes]
rs2096212	0.80[EUR][1000 genomes]
rs28454020	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4365933	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4551166	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56306564	0.89[EUR][1000 genomes]
rs57309153	0.89[EUR][1000 genomes]
rs57383866	0.89[EUR][1000 genomes]
rs57780024	0.83[EUR][1000 genomes]
rs57857965	0.83[EUR][1000 genomes]
rs58035103	0.89[EUR][1000 genomes]
rs58279883	0.83[EUR][1000 genomes]
rs58436507	0.90[EUR][1000 genomes]
rs58645956	0.81[EUR][1000 genomes]
rs58910903	0.87[EUR][1000 genomes]
rs59037030	0.90[EUR][1000 genomes]
rs61684483	0.87[EUR][1000 genomes]
rs66519836	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66835686	0.89[EUR][1000 genomes]
rs67947458	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72823491	0.85[EUR][1000 genomes]
rs72823498	0.85[EUR][1000 genomes]
rs72825609	0.85[EUR][1000 genomes]
rs72825626	0.93[EUR][1000 genomes]
rs72825628	0.93[EUR][1000 genomes]
rs72825649	0.87[EUR][1000 genomes]
rs72825654	0.89[EUR][1000 genomes]
rs72825657	0.89[EUR][1000 genomes]
rs72825659	0.89[EUR][1000 genomes]
rs72825660	0.89[EUR][1000 genomes]
rs72825662	0.90[EUR][1000 genomes]
rs72825664	0.89[EUR][1000 genomes]
rs72825669	0.82[EUR][1000 genomes]
rs72825676	0.82[EUR][1000 genomes]
rs729821	0.85[EUR][1000 genomes]
rs733409	0.85[EUR][1000 genomes]
rs760957	0.93[EUR][1000 genomes]
rs808363	0.90[EUR][1000 genomes]
rs808365	0.83[EUR][1000 genomes]
rs9383092	0.87[EUR][1000 genomes]
rs9464841	0.93[EUR][1000 genomes]
rs9476971	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476972	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476976	0.93[EUR][1000 genomes]
rs9476977	0.93[EUR][1000 genomes]
rs9476980	0.90[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15876400-15882200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:15876600-15882000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:15876600-15882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15879000-15882200	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:15879800-15882000	Enhancers	K562	blood
8	chr6:15880000-15882000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:15880000-15882000	Enhancers	Placenta	Placenta
10	chr6:15880000-15882000	Enhancers	NHEK	skin
11	chr6:15880600-15882000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:15880600-15882000	Enhancers	GM12878-XiMat	blood
13	chr6:15880600-15882200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:15880600-15883000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:15880600-15883000	Weak transcription	Ovary	ovary
16	chr6:15880600-15883200	Weak transcription	Left Ventricle	heart
17	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
19	chr6:15880800-15883000	Weak transcription	Fetal Lung	lung
20	chr6:15880800-15883000	Weak transcription	Fetal Stomach	stomach
21	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:15880800-15885800	Weak transcription	Psoas Muscle	Psoas
24	chr6:15881000-15883000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:15881200-15882000	Enhancers	HMEC	breast
26	chr6:15881400-15882000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:15881400-15882000	Enhancers	Spleen	Spleen
28	chr6:15881400-15882000	Enhancers	HUVEC	blood vessel
29	chr6:15881400-15882400	Enhancers	Adipose Nuclei	Adipose
30	chr6:15881400-15883200	Weak transcription	Esophagus	oesophagus
31	chr6:15881600-15882200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:15881600-15882200	Enhancers	Lung	lung
33	chr6:15881800-15882200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr6:15881800-15883800	Enhancers	Fetal Muscle Trunk	muscle
35	chr6:15881800-15883800	Enhancers	Fetal Muscle Leg	muscle

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