Variant report

Variant	rs9476973
Chromosome Location	chr6:15887614-15887615
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
2	chr6:15867696..15869985-chr6:15886465..15888191,2	K562	blood:
3	chr6:15868485..15870238-chr6:15886465..15888111,2	K562	blood:
4	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10085230	1.00[EUR][1000 genomes]
rs10085361	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1040469	1.00[CEU][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11751544	1.00[EUR][1000 genomes]
rs11754210	0.95[EUR][1000 genomes]
rs11755611	0.98[EUR][1000 genomes]
rs11756689	0.97[EUR][1000 genomes]
rs11756991	0.95[EUR][1000 genomes]
rs11757470	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap]
rs16877310	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16877316	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2096212	0.86[EUR][1000 genomes]
rs28454020	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4365933	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4551166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56306564	0.95[EUR][1000 genomes]
rs57309153	0.95[EUR][1000 genomes]
rs57383866	0.95[EUR][1000 genomes]
rs57780024	0.90[EUR][1000 genomes]
rs57857965	0.90[EUR][1000 genomes]
rs58035103	0.95[EUR][1000 genomes]
rs58279883	0.90[EUR][1000 genomes]
rs58436507	0.97[EUR][1000 genomes]
rs58645956	0.87[EUR][1000 genomes]
rs58910903	0.93[EUR][1000 genomes]
rs59037030	0.97[EUR][1000 genomes]
rs61684483	0.94[EUR][1000 genomes]
rs66519836	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66835686	0.95[EUR][1000 genomes]
rs67947458	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825626	1.00[EUR][1000 genomes]
rs72825628	1.00[EUR][1000 genomes]
rs72825649	0.93[EUR][1000 genomes]
rs72825654	0.95[EUR][1000 genomes]
rs72825657	0.95[EUR][1000 genomes]
rs72825659	0.95[EUR][1000 genomes]
rs72825660	0.95[EUR][1000 genomes]
rs72825662	0.97[EUR][1000 genomes]
rs72825664	0.95[EUR][1000 genomes]
rs72825669	0.88[EUR][1000 genomes]
rs72825676	0.88[EUR][1000 genomes]
rs729821	0.88[CEU][hapmap]
rs733409	0.88[CEU][hapmap]
rs73368559	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs760957	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7752521	1.00[CEU][hapmap]
rs808363	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs808365	0.89[EUR][1000 genomes]
rs9383092	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9464841	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9476970	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9476971	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476976	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9476977	1.00[EUR][1000 genomes]
rs9476980	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
2	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15886800-15887800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:15887000-15889800	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:15887400-15887800	Enhancers	Lung	lung
6	chr6:15887400-15888400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:15887400-15888400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:15887400-15888600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:15887400-15888600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:15887400-15889000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:15887400-15889000	Enhancers	Primary B cells from cord blood	blood
12	chr6:15887400-15889000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:15887400-15889600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:15887400-15889600	Enhancers	Spleen	Spleen
15	chr6:15887400-15890000	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:15887400-15890400	Enhancers	K562	blood
17	chr6:15887600-15887800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:15887600-15887800	Flanking Active TSS	GM12878-XiMat	blood
19	chr6:15887600-15888200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:15887600-15888200	Enhancers	Right Atrium	heart
21	chr6:15887600-15888200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:15887600-15888600	Enhancers	Fetal Muscle Leg	muscle
23	chr6:15887600-15888600	Enhancers	NHEK	skin
24	chr6:15887600-15889400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:15887600-15890200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links