Variant report

Variant	rs760957
Chromosome Location	chr6:15899192-15899193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
2	chr6:15898536..15902063-chr6:15905932..15909819,5	K562	blood:
3	chr6:15898268..15899852-chr6:16266790..16268393,2	K562	blood:
4	chr6:15898688..15901533-chr6:15925410..15927888,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10085230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10085361	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1040469	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs11751544	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11754210	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11755611	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11756689	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11756991	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757470	0.86[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs16877310	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877316	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs2096212	0.86[EUR][1000 genomes]
rs28454020	0.93[EUR][1000 genomes]
rs2876400	0.80[CEU][hapmap]
rs4365933	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs4551166	0.97[EUR][1000 genomes]
rs56306564	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57309153	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57383866	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57780024	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57857965	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58035103	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58279883	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58436507	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58645956	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58910903	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59037030	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61684483	0.94[EUR][1000 genomes]
rs66519836	1.00[EUR][1000 genomes]
rs66835686	0.95[EUR][1000 genomes]
rs67947458	0.93[EUR][1000 genomes]
rs72823484	0.81[AMR][1000 genomes]
rs72823498	0.81[AMR][1000 genomes]
rs72825609	0.81[AMR][1000 genomes]
rs72825626	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825628	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825649	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825654	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825657	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825659	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825660	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825662	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825664	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825669	0.88[EUR][1000 genomes]
rs72825676	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs729821	0.88[CEU][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs733409	0.88[CEU][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs73368559	0.93[EUR][1000 genomes]
rs742385	0.89[CEU][hapmap]
rs7752521	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs808363	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs808365	0.89[EUR][1000 genomes]
rs9383092	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9464841	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476970	1.00[CEU][hapmap]
rs9476971	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9476972	1.00[EUR][1000 genomes]
rs9476973	1.00[EUR][1000 genomes]
rs9476976	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476979	0.91[YRI][hapmap]
rs9476980	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15894400-15903000	Enhancers	Placenta	Placenta
2	chr6:15894600-15901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15897200-15899200	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:15897200-15901000	Enhancers	GM12878-XiMat	blood
5	chr6:15897800-15901400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
7	chr6:15898000-15900600	Weak transcription	Fetal Intestine Large	intestine
8	chr6:15898000-15900800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:15898000-15900800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:15898000-15901000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:15898000-15901000	Weak transcription	Liver	Liver
12	chr6:15898000-15901000	Weak transcription	Lung	lung
13	chr6:15898000-15901000	Weak transcription	NHEK	skin
14	chr6:15898000-15901200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:15898000-15901200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:15898000-15901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:15898000-15901400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:15898200-15900600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:15898200-15900800	Weak transcription	Adipose Nuclei	Adipose
20	chr6:15898200-15901000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:15898200-15901200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:15898400-15901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:15898400-15902000	Weak transcription	Spleen	Spleen
24	chr6:15898600-15899200	Enhancers	K562	blood
25	chr6:15898600-15901000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:15898600-15901400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:15898600-15901400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:15898600-15905000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:15898800-15899200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr6:15898800-15900600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:15898800-15900800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:15898800-15901600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:15899000-15901400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:15899000-15901400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:15899000-15901400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:15899000-15901400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:15899000-15901600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:15899000-15901800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:15899000-15905200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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