Variant report
Variant | rs16877348 |
---|---|
Chromosome Location | chr6:15930605-15930606 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000007944 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10085230 | 0.95[EUR][1000 genomes] |
rs10085361 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes] |
rs1040469 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes] |
rs11751544 | 0.95[EUR][1000 genomes] |
rs11754210 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11755611 | 0.97[EUR][1000 genomes] |
rs11755677 | 0.82[EUR][1000 genomes] |
rs11755935 | 0.81[EUR][1000 genomes] |
rs11756689 | 0.92[EUR][1000 genomes] |
rs11756991 | 1.00[EUR][1000 genomes] |
rs11757470 | 0.82[EUR][1000 genomes] |
rs11758001 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
rs1539421 | 1.00[CEU][hapmap];0.88[TSI][hapmap] |
rs16877310 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs16877316 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];1.00[EUR][1000 genomes] |
rs2096212 | 0.91[EUR][1000 genomes] |
rs28454020 | 0.89[EUR][1000 genomes] |
rs2876400 | 0.81[CEU][hapmap] |
rs4365933 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes] |
rs4551166 | 0.92[EUR][1000 genomes] |
rs56306564 | 1.00[EUR][1000 genomes] |
rs57309153 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57383866 | 1.00[EUR][1000 genomes] |
rs57780024 | 0.92[EUR][1000 genomes] |
rs57857965 | 0.92[EUR][1000 genomes] |
rs58035103 | 1.00[EUR][1000 genomes] |
rs58279883 | 0.92[EUR][1000 genomes] |
rs58436507 | 0.98[EUR][1000 genomes] |
rs58645956 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs58910903 | 0.98[EUR][1000 genomes] |
rs59037030 | 0.98[EUR][1000 genomes] |
rs61684483 | 0.95[EUR][1000 genomes] |
rs66519836 | 0.95[EUR][1000 genomes] |
rs66835686 | 1.00[EUR][1000 genomes] |
rs67947458 | 0.89[EUR][1000 genomes] |
rs72825626 | 0.95[EUR][1000 genomes] |
rs72825628 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs72825649 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs72825654 | 1.00[EUR][1000 genomes] |
rs72825657 | 1.00[EUR][1000 genomes] |
rs72825659 | 1.00[EUR][1000 genomes] |
rs72825660 | 1.00[EUR][1000 genomes] |
rs72825662 | 0.98[EUR][1000 genomes] |
rs72825664 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72825669 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs72825676 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs72825695 | 0.82[EUR][1000 genomes] |
rs72825697 | 0.82[EUR][1000 genomes] |
rs72829622 | 0.82[EUR][1000 genomes] |
rs729821 | 0.89[CEU][hapmap] |
rs733409 | 0.89[CEU][hapmap];1.00[MEX][hapmap] |
rs73368559 | 0.89[EUR][1000 genomes] |
rs742385 | 0.81[CEU][hapmap] |
rs760957 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes] |
rs7752521 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
rs808363 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
rs808365 | 0.94[EUR][1000 genomes] |
rs9383092 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes] |
rs9396619 | 1.00[CEU][hapmap] |
rs9464841 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
rs9476970 | 1.00[CEU][hapmap] |
rs9476971 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes] |
rs9476972 | 0.95[EUR][1000 genomes] |
rs9476973 | 0.95[EUR][1000 genomes] |
rs9476976 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
rs9476977 | 0.95[EUR][1000 genomes] |
rs9476980 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:15926000-15931000 | Weak transcription | Aorta | Aorta |
2 | chr6:15928000-15936400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
3 | chr6:15928600-15930800 | Enhancers | Primary monocytes fromperipheralblood | blood |
4 | chr6:15930000-15930800 | Weak transcription | Placenta | Placenta |
5 | chr6:15930000-15930800 | Enhancers | Monocytes-CD14+_RO01746 | blood |
6 | chr6:15930600-15931000 | Weak transcription | Adipose Nuclei | Adipose |
7 | chr6:15930600-15931600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |