Variant report

Variant	rs9476976
Chromosome Location	chr6:15903385-15903386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15902506..15905149-chr6:15905227..15906960,2	MCF-7	breast:
2	chr6:15903215..15905217-chr6:15920542..15922954,2	K562	blood:
3	chr6:15900513..15903584-chr6:16127917..16131194,7	K562	blood:
4	chr6:15895140..15896852-chr6:15901818..15904507,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10085230	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10085361	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1040469	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11751544	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11754210	0.95[EUR][1000 genomes]
rs11755611	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11756689	0.97[EUR][1000 genomes]
rs11756991	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757470	0.86[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap]
rs16877310	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877316	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2096212	0.86[EUR][1000 genomes]
rs28454020	0.93[EUR][1000 genomes]
rs2876400	0.81[CEU][hapmap]
rs4365933	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4551166	0.97[EUR][1000 genomes]
rs56306564	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57309153	0.95[EUR][1000 genomes]
rs57383866	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57780024	0.90[EUR][1000 genomes]
rs57857965	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58035103	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58279883	0.90[EUR][1000 genomes]
rs58436507	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58645956	0.87[EUR][1000 genomes]
rs58910903	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59037030	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61684483	0.94[EUR][1000 genomes]
rs66519836	1.00[EUR][1000 genomes]
rs66835686	0.95[EUR][1000 genomes]
rs67947458	0.93[EUR][1000 genomes]
rs72823491	0.83[AMR][1000 genomes]
rs72825626	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825628	1.00[EUR][1000 genomes]
rs72825649	0.93[EUR][1000 genomes]
rs72825654	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825657	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825659	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825660	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825662	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825664	0.95[EUR][1000 genomes]
rs72825669	0.88[EUR][1000 genomes]
rs72825676	0.88[EUR][1000 genomes]
rs729821	0.89[CEU][hapmap]
rs733409	0.89[CEU][hapmap]
rs73368559	0.93[EUR][1000 genomes]
rs760957	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752521	1.00[CEU][hapmap]
rs808363	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs808365	0.89[EUR][1000 genomes]
rs9367887	0.81[CEU][hapmap]
rs9383092	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9464841	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476970	1.00[CEU][hapmap]
rs9476971	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9476972	1.00[EUR][1000 genomes]
rs9476973	1.00[EUR][1000 genomes]
rs9476977	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476980	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
2	chr6:15898600-15905000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:15899000-15905200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:15900400-15908000	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:15901600-15905400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:15901600-15906200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:15901800-15904600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:15902000-15904600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:15902000-15904800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:15902000-15905200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:15902000-15905200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:15902000-15906200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:15902200-15904000	Enhancers	K562	blood
14	chr6:15902200-15904400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:15902200-15904600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:15902200-15905400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:15902200-15906200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:15902400-15904200	Weak transcription	Adipose Nuclei	Adipose
19	chr6:15902400-15905400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:15902400-15906200	Weak transcription	Spleen	Spleen
21	chr6:15902400-15906400	Weak transcription	Fetal Thymus	thymus
22	chr6:15902400-15907800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:15902400-15908400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:15902600-15904600	Weak transcription	Primary B cells from cord blood	blood
25	chr6:15902600-15905600	Weak transcription	Fetal Intestine Large	intestine
26	chr6:15902600-15907400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:15902800-15905400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:15902800-15905800	Enhancers	GM12878-XiMat	blood
29	chr6:15903000-15903400	Weak transcription	Placenta	Placenta
30	chr6:15903000-15903400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:15903200-15904600	Weak transcription	Primary monocytes fromperipheralblood	blood

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