Variant report

Variant	rs9476971
Chromosome Location	chr6:15886775-15886776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
3	chr6:15867696..15869985-chr6:15886465..15888191,2	K562	blood:
4	chr6:15868485..15870238-chr6:15886465..15888111,2	K562	blood:
5	chr6:15880603..15882867-chr6:15885643..15887252,2	K562	blood:
6	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
7	chr6:15883964..15886917-chr6:15959495..15962410,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10085230	1.00[EUR][1000 genomes]
rs10085361	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1040469	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11751544	1.00[EUR][1000 genomes]
rs11754210	0.95[EUR][1000 genomes]
rs11755611	0.98[EUR][1000 genomes]
rs11756689	0.97[EUR][1000 genomes]
rs11756991	0.95[EUR][1000 genomes]
rs11757470	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs16877310	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16877316	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs2096212	0.86[EUR][1000 genomes]
rs28454020	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2876400	0.81[CEU][hapmap]
rs4365933	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4551166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56306564	0.95[EUR][1000 genomes]
rs57309153	0.95[EUR][1000 genomes]
rs57383866	0.95[EUR][1000 genomes]
rs57780024	0.90[EUR][1000 genomes]
rs57857965	0.90[EUR][1000 genomes]
rs58035103	0.95[EUR][1000 genomes]
rs58279883	0.90[EUR][1000 genomes]
rs58436507	0.97[EUR][1000 genomes]
rs58645956	0.87[EUR][1000 genomes]
rs58910903	0.93[EUR][1000 genomes]
rs59037030	0.97[EUR][1000 genomes]
rs61684483	0.94[EUR][1000 genomes]
rs66519836	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66835686	0.95[EUR][1000 genomes]
rs67947458	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825626	1.00[EUR][1000 genomes]
rs72825628	1.00[EUR][1000 genomes]
rs72825649	0.93[EUR][1000 genomes]
rs72825654	0.95[EUR][1000 genomes]
rs72825657	0.95[EUR][1000 genomes]
rs72825659	0.95[EUR][1000 genomes]
rs72825660	0.95[EUR][1000 genomes]
rs72825662	0.97[EUR][1000 genomes]
rs72825664	0.95[EUR][1000 genomes]
rs72825669	0.88[EUR][1000 genomes]
rs72825676	0.88[EUR][1000 genomes]
rs729821	0.89[CEU][hapmap];0.81[TSI][hapmap]
rs733409	0.89[CEU][hapmap];1.00[MEX][hapmap]
rs73368559	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs742385	0.81[CEU][hapmap]
rs760957	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7752521	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs808363	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs808365	0.89[EUR][1000 genomes]
rs9383092	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9464841	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9476970	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9476972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476976	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9476977	1.00[EUR][1000 genomes]
rs9476980	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
3	chr6:15882000-15887200	Weak transcription	GM12878-XiMat	blood
4	chr6:15882000-15887400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:15882000-15887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:15882000-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:15882000-15887400	Weak transcription	K562	blood
8	chr6:15882200-15887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:15882200-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:15882200-15887400	Weak transcription	Lung	lung
11	chr6:15882400-15886800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
13	chr6:15883600-15887400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:15883600-15887600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:15883800-15887600	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:15886000-15887600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:15886200-15887600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:15886400-15887400	Weak transcription	Spleen	Spleen

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