Variant report

Variant	rs9476980
Chromosome Location	chr6:15915269-15915270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
2	chr6:15907286..15909989-chr6:15915065..15917372,2	MCF-7	breast:
3	chr6:15912597..15914681-chr6:15915197..15917941,2	K562	blood:
4	chr6:15912177..15914681-chr6:15915197..15917941,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10085230	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10085361	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1040469	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11751544	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11754210	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755611	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755677	0.81[EUR][1000 genomes]
rs11756689	0.93[EUR][1000 genomes]
rs11756991	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11757470	0.83[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16877310	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16877316	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2096212	0.89[EUR][1000 genomes]
rs28454020	0.90[EUR][1000 genomes]
rs2876400	0.81[CEU][hapmap]
rs4365933	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4551166	0.93[EUR][1000 genomes]
rs56306564	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57309153	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57383866	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57780024	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57857965	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58035103	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58279883	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58436507	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58645956	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58910903	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59037030	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61684483	0.97[EUR][1000 genomes]
rs66519836	0.97[EUR][1000 genomes]
rs66835686	0.98[EUR][1000 genomes]
rs67947458	0.90[EUR][1000 genomes]
rs72825626	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825628	0.97[EUR][1000 genomes]
rs72825649	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825654	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825657	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825659	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825660	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825662	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825664	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825669	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72825676	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72825695	0.81[EUR][1000 genomes]
rs72825697	0.81[EUR][1000 genomes]
rs72829622	0.81[EUR][1000 genomes]
rs729821	0.89[CEU][hapmap]
rs733409	0.89[CEU][hapmap]
rs73368559	0.90[EUR][1000 genomes]
rs760957	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7752521	1.00[CEU][hapmap]
rs808363	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs808365	0.92[EUR][1000 genomes]
rs9367887	0.81[CEU][hapmap]
rs9383092	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9464841	1.00[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9476970	1.00[CEU][hapmap]
rs9476971	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9476972	0.97[EUR][1000 genomes]
rs9476973	0.97[EUR][1000 genomes]
rs9476976	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9476977	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15912600-15915800	Weak transcription	Left Ventricle	heart
2	chr6:15913000-15915600	Weak transcription	Fetal Heart	heart
3	chr6:15913600-15915800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:15913600-15916800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:15913600-15920200	Weak transcription	Placenta	Placenta
6	chr6:15914000-15916400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:15914000-15921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:15914200-15915600	Enhancers	K562	blood

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