Variant report

Variant	rs11754210
Chromosome Location	chr6:15925741-15925742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15923596..15926466-chr6:15952289..15954964,2	K562	blood:
2	chr6:15922948..15926543-chr6:16128347..16132310,5	K562	blood:
3	chr6:15921762..15925061-chr6:15925136..15927911,3	MCF-7	breast:
4	chr6:15898688..15901533-chr6:15925410..15927888,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10085230	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10085361	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1040469	0.92[EUR][1000 genomes]
rs11751544	0.95[EUR][1000 genomes]
rs11755611	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755677	0.82[EUR][1000 genomes]
rs11755935	0.81[EUR][1000 genomes]
rs11756689	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11756991	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757470	0.82[EUR][1000 genomes]
rs11758001	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16877310	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877316	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877348	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2096212	0.91[EUR][1000 genomes]
rs28454020	0.89[EUR][1000 genomes]
rs4365933	0.92[EUR][1000 genomes]
rs4551166	0.92[EUR][1000 genomes]
rs56306564	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57309153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57383866	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57780024	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57857965	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58035103	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58279883	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58436507	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58645956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58910903	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59037030	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61684483	0.95[EUR][1000 genomes]
rs66519836	0.95[EUR][1000 genomes]
rs66835686	1.00[EUR][1000 genomes]
rs67947458	0.89[EUR][1000 genomes]
rs72823484	0.85[AMR][1000 genomes]
rs72823498	0.85[AMR][1000 genomes]
rs72825609	0.85[AMR][1000 genomes]
rs72825626	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825628	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825649	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825654	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825657	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825659	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825660	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825662	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825669	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825676	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825695	0.82[EUR][1000 genomes]
rs72825697	0.82[EUR][1000 genomes]
rs72829622	0.82[EUR][1000 genomes]
rs729821	0.85[AMR][1000 genomes]
rs733409	0.85[AMR][1000 genomes]
rs73368559	0.89[EUR][1000 genomes]
rs760957	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs808363	0.98[EUR][1000 genomes]
rs808365	0.94[EUR][1000 genomes]
rs9383092	0.95[EUR][1000 genomes]
rs9464841	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476971	0.95[EUR][1000 genomes]
rs9476972	0.95[EUR][1000 genomes]
rs9476973	0.95[EUR][1000 genomes]
rs9476976	0.95[EUR][1000 genomes]
rs9476977	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476980	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15921600-15927600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:15921600-15929400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:15922000-15926600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:15923600-15926600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:15923800-15925800	Weak transcription	Aorta	Aorta
6	chr6:15924000-15926400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:15924000-15926800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:15924400-15926600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:15924400-15926600	Weak transcription	K562	blood
10	chr6:15925200-15926600	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:15925200-15926600	Weak transcription	Placenta	Placenta

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