Variant report

Variant	rs72825609
Chromosome Location	chr6:15877987-15877988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15872228..15874969-chr6:15877326..15879276,3	K562	blood:
3	chr6:15877644..15879393-chr6:15883432..15885191,2	K562	blood:
4	chr6:15876663..15879393-chr6:15883432..15885018,2	K562	blood:
5	chr6:15856687..15858368-chr6:15877449..15879540,2	K562	blood:
6	chr6:15872117..15874631-chr6:15875616..15878274,2	K562	blood:
7	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
8	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rs_ID	r²[population]
rs10085230	0.81[AMR][1000 genomes]
rs10085361	0.81[AMR][1000 genomes]
rs1040469	0.82[EUR][1000 genomes]
rs10484350	0.93[EUR][1000 genomes]
rs11751345	0.93[EUR][1000 genomes]
rs11754210	0.85[AMR][1000 genomes]
rs11755611	0.81[AMR][1000 genomes]
rs11756689	0.86[AMR][1000 genomes]
rs11758001	0.81[AMR][1000 genomes]
rs13190914	0.93[EUR][1000 genomes]
rs28454020	0.85[EUR][1000 genomes]
rs4365933	0.82[EUR][1000 genomes]
rs4551166	0.82[EUR][1000 genomes]
rs57309153	0.85[AMR][1000 genomes]
rs58645956	0.85[AMR][1000 genomes]
rs67947458	0.85[EUR][1000 genomes]
rs72823484	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72823491	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72823498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825626	0.81[AMR][1000 genomes]
rs72825628	0.93[AMR][1000 genomes]
rs72825649	0.85[AMR][1000 genomes]
rs72825664	0.85[AMR][1000 genomes]
rs72825676	0.85[AMR][1000 genomes]
rs729821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73368559	0.85[EUR][1000 genomes]
rs760957	0.81[AMR][1000 genomes]
rs9464841	0.81[AMR][1000 genomes]
rs9476977	0.81[AMR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15872200-15879400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15872600-15879200	Weak transcription	Adipose Nuclei	Adipose
4	chr6:15873600-15879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:15873600-15879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:15875000-15879400	Weak transcription	NHLF	lung
7	chr6:15875000-15880000	Weak transcription	Psoas Muscle	Psoas
8	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:15875800-15878600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:15876400-15882200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:15876600-15879600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:15876600-15882000	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:15876600-15882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:15876800-15879000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:15876800-15879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:15877200-15879200	Weak transcription	NHDF-Ad	bronchial
17	chr6:15877200-15879400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:15877200-15879400	Weak transcription	GM12878-XiMat	blood
19	chr6:15877200-15879600	Weak transcription	HUVEC	blood vessel
20	chr6:15877200-15879800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:15877800-15878800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links