Variant report

Variant	rs72825676
Chromosome Location	chr6:15943674-15943675
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15943513..15946226-chr6:15956222..15957919,2	K562	blood:
2	chr6:15942064..15944736-chr6:15945639..15949280,3	K562	blood:
3	chr6:15943539..15950749-chr6:16127377..16131631,11	K562	blood:
4	chr6:15926509..15928201-chr6:15942706..15945656,2	K562	blood:
5	chr6:15941449..15944936-chr6:15948598..15951419,3	K562	blood:
6	chr6:15937839..15939748-chr6:15941539..15943920,2	K562	blood:
7	chr6:15942335..15943923-chr6:15950416..15952938,2	MCF-7	breast:
8	chr6:15936726..15941484-chr6:15942658..15946371,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10085230	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10085361	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1040469	0.85[EUR][1000 genomes]
rs11751544	0.88[EUR][1000 genomes]
rs11754210	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11755611	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11755677	0.88[EUR][1000 genomes]
rs11755935	0.87[EUR][1000 genomes]
rs11756689	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11756991	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11758001	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1539421	0.85[EUR][1000 genomes]
rs16877310	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16877316	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16877348	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2096212	0.85[EUR][1000 genomes]
rs28454020	0.82[EUR][1000 genomes]
rs4365933	0.85[EUR][1000 genomes]
rs4551166	0.85[EUR][1000 genomes]
rs56306564	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57309153	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57383866	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57780024	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57857965	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58035103	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58279883	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58436507	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58645956	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58910903	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59037030	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61684483	0.89[EUR][1000 genomes]
rs66519836	0.88[EUR][1000 genomes]
rs66835686	0.93[EUR][1000 genomes]
rs67947458	0.82[EUR][1000 genomes]
rs72823484	0.85[AMR][1000 genomes]
rs72823498	0.85[AMR][1000 genomes]
rs72825609	0.85[AMR][1000 genomes]
rs72825626	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72825628	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72825649	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72825654	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825657	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825659	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825660	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825662	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72825664	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825669	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825684	0.83[EUR][1000 genomes]
rs72825695	0.88[EUR][1000 genomes]
rs72825697	0.88[EUR][1000 genomes]
rs72829622	0.88[EUR][1000 genomes]
rs72829630	0.84[EUR][1000 genomes]
rs729821	0.85[AMR][1000 genomes]
rs733409	0.85[AMR][1000 genomes]
rs73368559	0.82[EUR][1000 genomes]
rs760957	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs808363	0.92[EUR][1000 genomes]
rs808365	0.87[EUR][1000 genomes]
rs9383092	0.95[EUR][1000 genomes]
rs9464841	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476971	0.88[EUR][1000 genomes]
rs9476972	0.88[EUR][1000 genomes]
rs9476973	0.88[EUR][1000 genomes]
rs9476976	0.88[EUR][1000 genomes]
rs9476977	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9476980	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15936400-15951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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