Variant report

Variant	rs58035103
Chromosome Location	chr6:15917370-15917371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
2	chr6:15904943..15906972-chr6:15916201..15918041,2	K562	blood:
3	chr6:15915745..15917442-chr6:16124332..16126940,2	K562	blood:
4	chr6:15907286..15909989-chr6:15915065..15917372,2	MCF-7	breast:
5	chr6:15912597..15914681-chr6:15915197..15917941,2	K562	blood:
6	chr6:15909152..15912123-chr6:15916464..15918319,2	MCF-7	breast:
7	chr6:15912177..15914681-chr6:15915197..15917941,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10085230	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10085361	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1040469	0.92[EUR][1000 genomes]
rs11751544	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11754210	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11755611	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755677	0.82[EUR][1000 genomes]
rs11755935	0.81[EUR][1000 genomes]
rs11756689	0.92[EUR][1000 genomes]
rs11756991	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757470	0.82[EUR][1000 genomes]
rs11758001	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16877310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877348	1.00[EUR][1000 genomes]
rs2096212	0.91[EUR][1000 genomes]
rs28454020	0.89[EUR][1000 genomes]
rs4365933	0.92[EUR][1000 genomes]
rs4551166	0.92[EUR][1000 genomes]
rs56306564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57309153	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57383866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57780024	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57857965	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58279883	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58436507	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58645956	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58910903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59037030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61684483	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66519836	0.95[EUR][1000 genomes]
rs66835686	1.00[EUR][1000 genomes]
rs67947458	0.89[EUR][1000 genomes]
rs72825626	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825628	0.95[EUR][1000 genomes]
rs72825649	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825664	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825669	0.93[EUR][1000 genomes]
rs72825676	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825695	0.82[EUR][1000 genomes]
rs72825697	0.82[EUR][1000 genomes]
rs72829622	0.82[EUR][1000 genomes]
rs73368559	0.89[EUR][1000 genomes]
rs760957	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs808363	0.98[EUR][1000 genomes]
rs808365	0.94[EUR][1000 genomes]
rs9383092	0.95[EUR][1000 genomes]
rs9464841	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476971	0.95[EUR][1000 genomes]
rs9476972	0.95[EUR][1000 genomes]
rs9476973	0.95[EUR][1000 genomes]
rs9476976	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476977	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476980	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15913600-15920200	Weak transcription	Placenta	Placenta
2	chr6:15914000-15921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:15916200-15917800	Enhancers	K562	blood
4	chr6:15917200-15917600	Active TSS	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links