Variant report

Variant	rs72825662
Chromosome Location	chr6:15922223-15922224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15921346..15923754-chr6:15927651..15930259,4	K562	blood:
2	chr6:15910080..15912614-chr6:15921343..15923025,2	K562	blood:
3	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
4	chr6:15903215..15905217-chr6:15920542..15922954,2	K562	blood:
5	chr6:15906805..15909911-chr6:15918758..15922441,3	MCF-7	breast:
6	chr6:15921762..15925061-chr6:15925136..15927911,3	MCF-7	breast:
7	chr6:15919878..15922302-chr6:16123718..16126512,2	K562	blood:
8	chr6:15920508..15922893-chr6:16129183..16131823,3	K562	blood:
9	chr6:15921188..15923824-chr6:16129330..16131247,3	MCF-7	breast:
10	chr6:15920045..15922599-chr6:15930327..15932865,2	K562	blood:
11	chr6:15909137..15912614-chr6:15921343..15924377,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10085230	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10085361	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1040469	0.93[EUR][1000 genomes]
rs11751544	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11754210	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755611	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755677	0.81[EUR][1000 genomes]
rs11756689	0.93[EUR][1000 genomes]
rs11756991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11757470	0.83[EUR][1000 genomes]
rs11758001	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539421	0.81[EUR][1000 genomes]
rs16877310	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16877316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16877348	0.98[EUR][1000 genomes]
rs2096212	0.89[EUR][1000 genomes]
rs28454020	0.90[EUR][1000 genomes]
rs4365933	0.93[EUR][1000 genomes]
rs4551166	0.93[EUR][1000 genomes]
rs56306564	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57309153	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57383866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57780024	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57857965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58035103	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58279883	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58436507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58645956	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58910903	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59037030	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61684483	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66519836	0.97[EUR][1000 genomes]
rs66835686	0.98[EUR][1000 genomes]
rs67947458	0.90[EUR][1000 genomes]
rs72825626	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825628	0.97[EUR][1000 genomes]
rs72825649	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825654	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825657	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825659	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825660	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825664	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825669	0.92[EUR][1000 genomes]
rs72825676	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72825695	0.81[EUR][1000 genomes]
rs72825697	0.81[EUR][1000 genomes]
rs72829622	0.81[EUR][1000 genomes]
rs73368559	0.90[EUR][1000 genomes]
rs760957	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs808363	1.00[EUR][1000 genomes]
rs808365	0.92[EUR][1000 genomes]
rs9383092	0.97[EUR][1000 genomes]
rs9464841	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9476971	0.97[EUR][1000 genomes]
rs9476972	0.97[EUR][1000 genomes]
rs9476973	0.97[EUR][1000 genomes]
rs9476976	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9476977	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9476980	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15920200-15924600	Enhancers	Placenta	Placenta
2	chr6:15921400-15924000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:15921600-15924200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:15921600-15924400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:15921600-15927600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:15921600-15929400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:15922000-15923200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:15922000-15924200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:15922000-15924400	Enhancers	HUVEC	blood vessel
10	chr6:15922000-15926600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:15922200-15922800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:15922200-15923000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:15922200-15923800	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:15922200-15924400	Enhancers	K562	blood

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