Variant report

Variant	rs16877316
Chromosome Location	chr6:15918988-15918989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15907017..15909821-chr6:15918097..15920642,2	K562	blood:
2	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
3	chr6:15918087..15920599-chr6:15926761..15928531,2	K562	blood:
4	chr6:15906805..15909911-chr6:15918758..15922441,3	MCF-7	breast:
5	chr6:15918444..15920518-chr6:16135623..16137527,2	K562	blood:
6	chr6:15917469..15919347-chr6:15945804..15947857,2	MCF-7	breast:
7	chr6:15908723..15911545-chr6:15918513..15920780,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10085230	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10085361	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1040469	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11751544	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11754210	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11755611	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755677	0.82[EUR][1000 genomes]
rs11755935	0.81[EUR][1000 genomes]
rs11756689	0.92[EUR][1000 genomes]
rs11756991	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757470	0.82[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs16877310	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];1.00[EUR][1000 genomes]
rs2096212	0.91[EUR][1000 genomes]
rs28454020	0.89[EUR][1000 genomes]
rs2876400	0.81[CEU][hapmap]
rs4365933	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs4551166	0.92[EUR][1000 genomes]
rs56306564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57309153	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57383866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57780024	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57857965	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58035103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58279883	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58436507	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58645956	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58910903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59037030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61684483	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66519836	0.95[EUR][1000 genomes]
rs66835686	1.00[EUR][1000 genomes]
rs67947458	0.89[EUR][1000 genomes]
rs72825626	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825628	0.95[EUR][1000 genomes]
rs72825649	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825664	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825669	0.93[EUR][1000 genomes]
rs72825676	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825695	0.82[EUR][1000 genomes]
rs72825697	0.82[EUR][1000 genomes]
rs72829622	0.82[EUR][1000 genomes]
rs729821	0.89[CEU][hapmap];0.81[TSI][hapmap]
rs733409	0.89[CEU][hapmap];1.00[MEX][hapmap]
rs73368559	0.89[EUR][1000 genomes]
rs742385	0.81[CEU][hapmap]
rs760957	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7752521	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs808363	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs808365	0.94[EUR][1000 genomes]
rs9383092	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9464841	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476970	1.00[CEU][hapmap]
rs9476971	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs9476972	0.95[EUR][1000 genomes]
rs9476973	0.95[EUR][1000 genomes]
rs9476976	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476977	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9476980	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15913600-15920200	Weak transcription	Placenta	Placenta
2	chr6:15914000-15921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:15917800-15922200	Weak transcription	K562	blood

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