Variant report

Variant	rs2876400
Chromosome Location	chr6:15956465-15956466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15953240..15956726-chr6:16129435..16131819,3	K562	blood:
2	chr6:15943513..15946226-chr6:15956222..15957919,2	K562	blood:
3	chr6:15947406..15949542-chr6:15954395..15956936,3	K562	blood:
4	chr6:15954951..15957430-chr6:16129209..16130717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rs_ID	r²[population]
rs10085361	0.81[CEU][hapmap]
rs1040469	0.81[CEU][hapmap]
rs11758001	0.81[CEU][hapmap]
rs1539421	0.81[CEU][hapmap]
rs16877310	0.81[CEU][hapmap]
rs16877316	0.81[CEU][hapmap]
rs16877348	0.81[CEU][hapmap]
rs4365933	0.81[CEU][hapmap]
rs55968425	0.96[ASN][1000 genomes]
rs67757263	0.84[ASN][1000 genomes]
rs760957	0.80[CEU][hapmap]
rs7752521	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs808363	0.81[CEU][hapmap]
rs9383092	0.81[CEU][hapmap]
rs9383095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9396619	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs9396620	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs9464841	0.81[CEU][hapmap]
rs9476970	0.90[CEU][hapmap]
rs9476971	0.81[CEU][hapmap]
rs9476976	0.81[CEU][hapmap]
rs9476980	0.81[CEU][hapmap]
rs9476999	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9477000	0.96[ASN][1000 genomes]

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15949800-15956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15949800-15956600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:15950800-15956600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:15951000-15961600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:15951600-15957800	Weak transcription	Gastric	stomach
6	chr6:15953200-15956600	Weak transcription	Pancreas	Pancrea
7	chr6:15953600-15956600	Weak transcription	Lung	lung
8	chr6:15954000-15956600	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:15954000-15961400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:15954000-15961400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:15954000-15961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:15954200-15961400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:15954200-15961600	Weak transcription	Left Ventricle	heart
14	chr6:15954400-15956600	Weak transcription	Placenta	Placenta
15	chr6:15954400-15956800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:15955600-15958000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:15955600-15958000	Enhancers	Fetal Intestine Small	intestine
18	chr6:15955600-15959000	Enhancers	K562	blood
19	chr6:15955800-15956600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:15955800-15958200	Enhancers	Fetal Intestine Large	intestine
21	chr6:15956000-15956800	Enhancers	Fetal Heart	heart
22	chr6:15956000-15957400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:15956000-15957400	Enhancers	Fetal Lung	lung
24	chr6:15956200-15956600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr6:15956200-15956600	Weak transcription	Right Atrium	heart
26	chr6:15956200-15956600	Bivalent Enhancer	HepG2	liver
27	chr6:15956400-15956800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:15956400-15956800	Enhancers	Fetal Kidney	kidney
29	chr6:15956400-15956800	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr6:15956400-15956800	Enhancers	A549	lung
31	chr6:15956400-15957000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:15956400-15957000	Enhancers	Adipose Nuclei	Adipose
33	chr6:15956400-15957000	Flanking Active TSS	Colonic Mucosa	Colon
34	chr6:15956400-15957000	Enhancers	Fetal Stomach	stomach
35	chr6:15956400-15957000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr6:15956400-15957000	Bivalent Enhancer	Stomach Mucosa	stomach
37	chr6:15956400-15957200	Enhancers	Liver	Liver
38	chr6:15956400-15957200	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr6:15956400-15957800	Enhancers	HUVEC	blood vessel

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