Variant report

Variant	rs9477000
Chromosome Location	chr6:15964449-15964450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2153910	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2876400	0.96[ASN][1000 genomes]
rs4712270	1.00[EUR][1000 genomes]
rs4716018	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55968425	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67757263	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383087	0.89[EUR][1000 genomes]
rs9383095	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396620	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396624	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9476999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15961600-15964600	Weak transcription	K562	blood
2	chr6:15962600-15965400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:15963000-15966200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:15963200-15966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:15963200-15969000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:15963200-15969000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:15963600-15968400	Weak transcription	HMEC	breast
8	chr6:15963600-15969000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:15964400-15964600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links