Variant report

Variant	rs9396620
Chromosome Location	chr6:15955537-15955538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15953240..15956726-chr6:16129435..16131819,3	K562	blood:
2	chr6:15947406..15949542-chr6:15954395..15956936,3	K562	blood:
3	chr6:15954730..15955700-chr7:97086457..97086982,2	MCF-7	breast:
4	chr6:15954951..15957430-chr6:16129209..16130717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12660370	1.00[CEU][hapmap]
rs12665492	1.00[CEU][hapmap]
rs2153910	0.89[EUR][1000 genomes]
rs2876400	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs4712270	1.00[EUR][1000 genomes]
rs4716018	1.00[EUR][1000 genomes]
rs55968425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67757263	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383087	0.89[EUR][1000 genomes]
rs9383095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396624	1.00[EUR][1000 genomes]
rs9476999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9477000	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15949800-15956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15949800-15956600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:15950400-15956000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15950800-15955800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:15950800-15955800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:15950800-15956600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:15951000-15961600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:15951600-15957800	Weak transcription	Gastric	stomach
9	chr6:15953200-15956600	Weak transcription	Pancreas	Pancrea
10	chr6:15953400-15955600	Weak transcription	K562	blood
11	chr6:15953600-15956600	Weak transcription	Lung	lung
12	chr6:15953800-15955600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:15953800-15955600	Weak transcription	Fetal Intestine Small	intestine
14	chr6:15953800-15956000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:15953800-15956400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:15954000-15956000	Weak transcription	Fetal Lung	lung
17	chr6:15954000-15956400	Weak transcription	Adipose Nuclei	Adipose
18	chr6:15954000-15956400	Weak transcription	Liver	Liver
19	chr6:15954000-15956400	Weak transcription	Fetal Kidney	kidney
20	chr6:15954000-15956600	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:15954000-15961400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:15954000-15961400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:15954000-15961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:15954200-15956000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:15954200-15956000	Weak transcription	Right Atrium	heart
26	chr6:15954200-15956400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:15954200-15956400	Weak transcription	Fetal Stomach	stomach
28	chr6:15954200-15961400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:15954200-15961600	Weak transcription	Left Ventricle	heart
30	chr6:15954400-15956000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:15954400-15956200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:15954400-15956400	Weak transcription	HUVEC	blood vessel
33	chr6:15954400-15956600	Weak transcription	Placenta	Placenta
34	chr6:15954400-15956800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:15954800-15956000	Weak transcription	Fetal Heart	heart

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