Variant report

Variant	rs10085361
Chromosome Location	chr6:15894479-15894480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15892800..15899119-chr6:16126817..16134608,27	K562	blood:
2	chr6:15853562..15855771-chr6:15893985..15896644,2	K562	blood:
3	chr6:15894030..15895830-chr6:16119624..16122566,2	K562	blood:
4	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
5	chr6:15696754..15698975-chr6:15892314..15894571,2	K562	blood:
6	chr6:15894477..15896560-chr6:15907107..15909590,2	MCF-7	breast:
7	chr6:15892870..15894834-chr6:16149062..16151137,2	K562	blood:
8	chr6:15893747..15894608-chr6:16128991..16129915,2	NB4	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10085230	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1040469	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs11751544	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11754210	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11755611	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11756689	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11756991	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757470	0.86[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs16877310	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877316	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs2096212	0.86[EUR][1000 genomes]
rs28454020	0.93[EUR][1000 genomes]
rs2876400	0.81[CEU][hapmap]
rs4365933	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs4551166	0.97[EUR][1000 genomes]
rs56306564	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57309153	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57383866	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57780024	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57857965	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58035103	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58279883	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58436507	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58645956	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58910903	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59037030	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61684483	0.94[EUR][1000 genomes]
rs66519836	1.00[EUR][1000 genomes]
rs66835686	0.95[EUR][1000 genomes]
rs67947458	0.93[EUR][1000 genomes]
rs72823484	0.81[AMR][1000 genomes]
rs72823498	0.81[AMR][1000 genomes]
rs72825609	0.81[AMR][1000 genomes]
rs72825626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825628	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825649	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72825654	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825657	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825659	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825660	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825662	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825664	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825669	0.88[EUR][1000 genomes]
rs72825676	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs729821	0.89[CEU][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs733409	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs73368559	0.93[EUR][1000 genomes]
rs742385	0.81[CEU][hapmap]
rs760957	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752521	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs808363	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs808365	0.89[EUR][1000 genomes]
rs9383092	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9464841	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476970	1.00[CEU][hapmap]
rs9476971	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9476972	1.00[EUR][1000 genomes]
rs9476973	1.00[EUR][1000 genomes]
rs9476976	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476979	0.91[YRI][hapmap]
rs9476980	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
2	chr6:15889600-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:15889600-15897400	Weak transcription	Spleen	Spleen
4	chr6:15889800-15895800	Weak transcription	Fetal Lung	lung
5	chr6:15890200-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:15893000-15897200	Weak transcription	Right Atrium	heart
7	chr6:15893400-15896800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:15893600-15897000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:15894000-15895400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:15894200-15894600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:15894200-15895000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:15894200-15895000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:15894200-15895000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:15894200-15895400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:15894200-15898000	Enhancers	Fetal Intestine Small	intestine
16	chr6:15894400-15894600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:15894400-15894800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:15894400-15894800	Enhancers	Fetal Intestine Large	intestine
19	chr6:15894400-15895000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr6:15894400-15895400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:15894400-15895400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:15894400-15903000	Enhancers	Placenta	Placenta

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