Variant report

Variant	rs729821
Chromosome Location	chr6:15870626-15870627
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15859584..15861155-chr6:15868423..15870728,2	K562	blood:
2	chr6:15869215..15876030-chr6:16126980..16132874,9	K562	blood:
3	chr6:15870383..15873187-chr6:16133661..16135212,2	K562	blood:
4	chr6:15870044..15875331-chr6:16125513..16132572,8	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10085230	0.81[AMR][1000 genomes]
rs10085361	0.89[CEU][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs1040469	0.89[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs10484350	0.93[EUR][1000 genomes]
rs11751345	0.93[EUR][1000 genomes]
rs11754210	0.85[AMR][1000 genomes]
rs11755611	0.81[AMR][1000 genomes]
rs11756689	0.86[AMR][1000 genomes]
rs11758001	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs13190914	0.93[EUR][1000 genomes]
rs1539421	0.89[CEU][hapmap]
rs16877310	0.89[CEU][hapmap]
rs16877316	0.89[CEU][hapmap];0.81[TSI][hapmap]
rs16877348	0.89[CEU][hapmap]
rs28454020	0.85[EUR][1000 genomes]
rs4365933	0.89[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs4551166	0.82[EUR][1000 genomes]
rs57309153	0.85[AMR][1000 genomes]
rs58645956	0.85[AMR][1000 genomes]
rs6459415	0.83[TSI][hapmap]
rs67947458	0.85[EUR][1000 genomes]
rs72823484	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72823491	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72823498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72825626	0.81[AMR][1000 genomes]
rs72825628	0.93[AMR][1000 genomes]
rs72825649	0.85[AMR][1000 genomes]
rs72825664	0.85[AMR][1000 genomes]
rs72825676	0.85[AMR][1000 genomes]
rs733409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73368559	0.85[EUR][1000 genomes]
rs760957	0.88[CEU][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs7752521	0.89[CEU][hapmap]
rs808363	0.89[CEU][hapmap]
rs9383092	0.89[CEU][hapmap]
rs9396619	0.89[CEU][hapmap]
rs9464841	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs9476970	0.89[CEU][hapmap]
rs9476971	0.89[CEU][hapmap];0.81[TSI][hapmap]
rs9476976	0.89[CEU][hapmap]
rs9476977	0.81[AMR][1000 genomes]
rs9476980	0.89[CEU][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15863400-15872600	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:15864600-15871600	Weak transcription	Left Ventricle	heart
3	chr6:15868000-15871600	Weak transcription	Fetal Kidney	kidney
4	chr6:15869200-15872800	Weak transcription	K562	blood
5	chr6:15870000-15873200	Enhancers	HUVEC	blood vessel
6	chr6:15870200-15873200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15870400-15870800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:15870400-15871000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:15870400-15871600	Enhancers	Adipose Nuclei	Adipose
10	chr6:15870400-15872800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:15870600-15870800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:15870600-15871000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:15870600-15871000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:15870600-15871000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr6:15870600-15873800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:15870600-15873800	Enhancers	NHDF-Ad	bronchial
17	chr6:15870600-15875000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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