Variant report

Variant	rs11755611
Chromosome Location	chr6:15906967-15906968
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15904540..15907068-chr6:16133158..16135126,2	K562	blood:
2	chr6:15905366..15907068-chr6:16132986..16135126,2	K562	blood:
3	chr6:15906619..15910690-chr6:16127515..16130583,3	MCF-7	breast:
4	chr6:15763498..15765929-chr6:15906777..15908450,2	MCF-7	breast:
5	chr6:15904972..15907971-chr6:15936573..15939321,3	K562	blood:
6	chr6:15904841..15911387-chr6:16127865..16132183,18	K562	blood:
7	chr6:15769393..15771029-chr6:15905967..15908693,2	MCF-7	breast:
8	chr6:15898536..15902063-chr6:15905932..15909819,5	K562	blood:
9	chr6:15906496..15909467-chr6:16138349..16140089,2	K562	blood:
10	chr6:15906805..15909911-chr6:15918758..15922441,3	MCF-7	breast:
11	chr6:15905196..15908263-chr6:15984889..15987796,3	K562	blood:
12	chr6:15904943..15906972-chr6:15916201..15918041,2	K562	blood:
13	chr6:15905525..15908697-chr6:16128021..16130958,3	MCF-7	breast:
14	chr6:15905879..15907847-chr6:20402155..20403710,2	K562	blood:
15	chr6:15895394..15897101-chr6:15905785..15908150,2	K562	blood:
16	chr6:15904710..15908298-chr6:16128127..16132826,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112242	Chromatin interaction
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10085230	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10085361	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1040469	0.95[EUR][1000 genomes]
rs11751544	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11754210	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11756689	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11756991	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11757470	0.85[EUR][1000 genomes]
rs11758001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16877310	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16877316	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16877348	0.97[EUR][1000 genomes]
rs2096212	0.88[EUR][1000 genomes]
rs28454020	0.92[EUR][1000 genomes]
rs4365933	0.95[EUR][1000 genomes]
rs4551166	0.95[EUR][1000 genomes]
rs56306564	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57309153	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57383866	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57780024	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57857965	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58035103	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58279883	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58436507	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58645956	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58910903	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59037030	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61684483	0.95[EUR][1000 genomes]
rs66519836	0.98[EUR][1000 genomes]
rs66835686	0.97[EUR][1000 genomes]
rs67947458	0.92[EUR][1000 genomes]
rs72823484	0.81[AMR][1000 genomes]
rs72823498	0.81[AMR][1000 genomes]
rs72825609	0.81[AMR][1000 genomes]
rs72825626	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825628	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825649	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72825654	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825657	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825659	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825660	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825662	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72825664	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72825669	0.90[EUR][1000 genomes]
rs72825676	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs729821	0.81[AMR][1000 genomes]
rs733409	0.81[AMR][1000 genomes]
rs73368559	0.92[EUR][1000 genomes]
rs760957	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs808363	0.98[EUR][1000 genomes]
rs808365	0.91[EUR][1000 genomes]
rs9383092	0.95[EUR][1000 genomes]
rs9464841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9476971	0.98[EUR][1000 genomes]
rs9476972	0.98[EUR][1000 genomes]
rs9476973	0.98[EUR][1000 genomes]
rs9476975	0.84[AFR][1000 genomes]
rs9476976	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9476977	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9476980	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
2	chr6:15900400-15908000	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:15902400-15907800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:15902400-15908400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:15902600-15907400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:15904400-15907000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:15904600-15907200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:15904600-15908000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:15904600-15908600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:15904800-15911600	Enhancers	Placenta	Placenta
11	chr6:15904800-15913600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:15905000-15911000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:15905200-15907000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:15905200-15907000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:15905200-15907000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:15905200-15907000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:15905200-15907400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:15905400-15907000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:15905400-15907000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr6:15905600-15907200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:15905800-15907000	Enhancers	Fetal Kidney	kidney
22	chr6:15905800-15907000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:15906000-15907000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:15906000-15907000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:15906200-15907200	Enhancers	Esophagus	oesophagus
26	chr6:15906200-15908200	Weak transcription	Fetal Intestine Large	intestine
27	chr6:15906200-15910400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:15906400-15912000	Weak transcription	Adipose Nuclei	Adipose
29	chr6:15906600-15908000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:15906600-15908000	Weak transcription	Fetal Intestine Small	intestine
31	chr6:15906600-15908200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:15906600-15912200	Weak transcription	Spleen	Spleen
33	chr6:15906800-15907800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:15906800-15908000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:15906800-15908000	Enhancers	K562	blood
36	chr6:15906800-15910200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr6:15906800-15910600	Enhancers	GM12878-XiMat	blood
38	chr6:15906800-15912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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