Variant report

Variant	rs808365
Chromosome Location	chr6:15917521-15917522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
2	chr6:15904943..15906972-chr6:15916201..15918041,2	K562	blood:
3	chr6:15912597..15914681-chr6:15915197..15917941,2	K562	blood:
4	chr6:15917469..15919347-chr6:15945804..15947857,2	MCF-7	breast:
5	chr6:15909152..15912123-chr6:15916464..15918319,2	MCF-7	breast:
6	chr6:15912177..15914681-chr6:15915197..15917941,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rs_ID	r²[population]
rs10085230	0.89[EUR][1000 genomes]
rs10085361	0.89[EUR][1000 genomes]
rs1040469	0.86[EUR][1000 genomes]
rs11751544	0.89[EUR][1000 genomes]
rs11754210	0.94[EUR][1000 genomes]
rs11755611	0.91[EUR][1000 genomes]
rs11756689	0.86[EUR][1000 genomes]
rs11756991	0.94[EUR][1000 genomes]
rs11758001	0.91[EUR][1000 genomes]
rs16877310	0.94[EUR][1000 genomes]
rs16877316	0.94[EUR][1000 genomes]
rs16877348	0.94[EUR][1000 genomes]
rs2096212	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28454020	0.83[EUR][1000 genomes]
rs4365933	0.86[EUR][1000 genomes]
rs4551166	0.86[EUR][1000 genomes]
rs56306564	0.94[EUR][1000 genomes]
rs57309153	0.94[EUR][1000 genomes]
rs57383866	0.94[EUR][1000 genomes]
rs57780024	0.86[EUR][1000 genomes]
rs57857965	0.86[EUR][1000 genomes]
rs58035103	0.94[EUR][1000 genomes]
rs58279883	0.86[EUR][1000 genomes]
rs58436507	0.92[EUR][1000 genomes]
rs58645956	0.86[EUR][1000 genomes]
rs58910903	0.92[EUR][1000 genomes]
rs59037030	0.92[EUR][1000 genomes]
rs61684483	0.89[EUR][1000 genomes]
rs66519836	0.89[EUR][1000 genomes]
rs66835686	0.94[EUR][1000 genomes]
rs67947458	0.83[EUR][1000 genomes]
rs707840	0.81[ASN][1000 genomes]
rs72825626	0.89[EUR][1000 genomes]
rs72825628	0.89[EUR][1000 genomes]
rs72825649	0.89[EUR][1000 genomes]
rs72825654	0.94[EUR][1000 genomes]
rs72825657	0.94[EUR][1000 genomes]
rs72825659	0.94[EUR][1000 genomes]
rs72825660	0.94[EUR][1000 genomes]
rs72825662	0.92[EUR][1000 genomes]
rs72825664	0.94[EUR][1000 genomes]
rs72825669	0.87[EUR][1000 genomes]
rs72825676	0.87[EUR][1000 genomes]
rs73368559	0.83[EUR][1000 genomes]
rs760957	0.89[EUR][1000 genomes]
rs808363	0.92[EUR][1000 genomes]
rs9383092	0.89[EUR][1000 genomes]
rs9464841	0.89[EUR][1000 genomes]
rs9476971	0.89[EUR][1000 genomes]
rs9476972	0.89[EUR][1000 genomes]
rs9476973	0.89[EUR][1000 genomes]
rs9476976	0.89[EUR][1000 genomes]
rs9476977	0.89[EUR][1000 genomes]
rs9476980	0.92[EUR][1000 genomes]

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15913600-15920200	Weak transcription	Placenta	Placenta
2	chr6:15914000-15921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:15916200-15917800	Enhancers	K562	blood
4	chr6:15917200-15917600	Active TSS	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links