Variant report

Variant	rs4365933
Chromosome Location	chr6:15884534-15884535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15696534..15698771-chr6:15883531..15885390,2	K562	blood:
2	chr6:15879446..15881923-chr6:15881943..15885281,3	K562	blood:
3	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
4	chr6:15876663..15879393-chr6:15883432..15885018,2	K562	blood:
5	chr6:15882525..15884862-chr6:15922870..15925036,2	K562	blood:
6	chr6:15884328..15886585-chr6:15962945..15965277,2	K562	blood:
7	chr6:15877644..15879393-chr6:15883432..15885191,2	K562	blood:
8	chr6:15883256..15885038-chr6:16130440..16132309,2	MCF-7	breast:
9	chr6:15883964..15886917-chr6:15959495..15962410,2	K562	blood:
10	chr6:15882852..15885272-chr6:16128267..16130804,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10085230	0.97[EUR][1000 genomes]
rs10085361	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs1040469	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751544	0.97[EUR][1000 genomes]
rs11754210	0.92[EUR][1000 genomes]
rs11755611	0.95[EUR][1000 genomes]
rs11756689	0.93[EUR][1000 genomes]
rs11756991	0.92[EUR][1000 genomes]
rs11757470	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1539421	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs16877310	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16877316	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs16877348	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs2096212	0.83[EUR][1000 genomes]
rs28454020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2876400	0.81[CEU][hapmap]
rs4551166	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56306564	0.92[EUR][1000 genomes]
rs57309153	0.92[EUR][1000 genomes]
rs57383866	0.92[EUR][1000 genomes]
rs57780024	0.87[EUR][1000 genomes]
rs57857965	0.87[EUR][1000 genomes]
rs58035103	0.92[EUR][1000 genomes]
rs58279883	0.87[EUR][1000 genomes]
rs58436507	0.93[EUR][1000 genomes]
rs58645956	0.84[EUR][1000 genomes]
rs58910903	0.90[EUR][1000 genomes]
rs59037030	0.93[EUR][1000 genomes]
rs61684483	0.90[EUR][1000 genomes]
rs66519836	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66835686	0.92[EUR][1000 genomes]
rs67947458	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72823491	0.82[EUR][1000 genomes]
rs72823498	0.82[EUR][1000 genomes]
rs72825609	0.82[EUR][1000 genomes]
rs72825626	0.97[EUR][1000 genomes]
rs72825628	0.97[EUR][1000 genomes]
rs72825649	0.90[EUR][1000 genomes]
rs72825654	0.92[EUR][1000 genomes]
rs72825657	0.92[EUR][1000 genomes]
rs72825659	0.92[EUR][1000 genomes]
rs72825660	0.92[EUR][1000 genomes]
rs72825662	0.93[EUR][1000 genomes]
rs72825664	0.92[EUR][1000 genomes]
rs72825669	0.85[EUR][1000 genomes]
rs72825676	0.85[EUR][1000 genomes]
rs729821	0.89[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs733409	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs73368559	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs742385	0.81[CEU][hapmap]
rs760957	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7752521	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs808363	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs808365	0.86[EUR][1000 genomes]
rs9383092	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9396619	1.00[CEU][hapmap]
rs9464841	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9476970	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs9476971	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9476972	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9476973	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9476976	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9476977	0.97[EUR][1000 genomes]
rs9476980	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
3	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:15880800-15885800	Weak transcription	Psoas Muscle	Psoas
6	chr6:15882000-15885800	Weak transcription	Spleen	Spleen
7	chr6:15882000-15887200	Weak transcription	GM12878-XiMat	blood
8	chr6:15882000-15887400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:15882000-15887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:15882000-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:15882000-15887400	Weak transcription	K562	blood
12	chr6:15882200-15887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:15882200-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:15882200-15887400	Weak transcription	Lung	lung
15	chr6:15882400-15885800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:15882400-15886800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
18	chr6:15883600-15887400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:15883600-15887600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:15883800-15887600	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:15884400-15884600	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:15884400-15884600	Enhancers	Fetal Muscle Trunk	muscle

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