Variant report

Variant	rs7752521
Chromosome Location	chr6:15955687-15955688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15953240..15956726-chr6:16129435..16131819,3	K562	blood:
2	chr6:15947406..15949542-chr6:15954395..15956936,3	K562	blood:
3	chr6:15954730..15955700-chr7:97086457..97086982,2	MCF-7	breast:
4	chr6:15954951..15957430-chr6:16129209..16130717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10085361	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs1040469	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs11755677	0.83[EUR][1000 genomes]
rs11755935	0.82[EUR][1000 genomes]
rs11758001	1.00[CEU][hapmap]
rs1342739	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs1342745	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1539421	1.00[CEU][hapmap]
rs16877310	1.00[CEU][hapmap]
rs16877316	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs16877348	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs1891515	0.90[AFR][1000 genomes]
rs2876400	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs4365933	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs72825684	0.86[EUR][1000 genomes]
rs72825695	0.83[EUR][1000 genomes]
rs72825697	0.83[EUR][1000 genomes]
rs72829622	0.83[EUR][1000 genomes]
rs729821	0.89[CEU][hapmap]
rs733409	0.89[CEU][hapmap]
rs742385	0.81[CEU][hapmap]
rs760957	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs808363	1.00[CEU][hapmap]
rs9383092	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs9396619	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464841	1.00[CEU][hapmap]
rs9476970	1.00[CEU][hapmap]
rs9476971	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs9476976	1.00[CEU][hapmap]
rs9476980	1.00[CEU][hapmap]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15949800-15956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15949800-15956600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:15950400-15956000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15950800-15955800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:15950800-15955800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:15950800-15956600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:15951000-15961600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:15951600-15957800	Weak transcription	Gastric	stomach
9	chr6:15953200-15956600	Weak transcription	Pancreas	Pancrea
10	chr6:15953600-15956600	Weak transcription	Lung	lung
11	chr6:15953800-15956000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:15953800-15956400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:15954000-15956000	Weak transcription	Fetal Lung	lung
14	chr6:15954000-15956400	Weak transcription	Adipose Nuclei	Adipose
15	chr6:15954000-15956400	Weak transcription	Liver	Liver
16	chr6:15954000-15956400	Weak transcription	Fetal Kidney	kidney
17	chr6:15954000-15956600	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:15954000-15961400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:15954000-15961400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:15954000-15961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:15954200-15956000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:15954200-15956000	Weak transcription	Right Atrium	heart
23	chr6:15954200-15956400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:15954200-15956400	Weak transcription	Fetal Stomach	stomach
25	chr6:15954200-15961400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:15954200-15961600	Weak transcription	Left Ventricle	heart
27	chr6:15954400-15956000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:15954400-15956200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:15954400-15956400	Weak transcription	HUVEC	blood vessel
30	chr6:15954400-15956600	Weak transcription	Placenta	Placenta
31	chr6:15954400-15956800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:15954800-15956000	Weak transcription	Fetal Heart	heart
33	chr6:15955600-15958000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:15955600-15958000	Enhancers	Fetal Intestine Small	intestine
35	chr6:15955600-15959000	Enhancers	K562	blood

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