Variant report

Variant	rs742385
Chromosome Location	chr6:15916856-15916857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
2	chr6:15904943..15906972-chr6:15916201..15918041,2	K562	blood:
3	chr6:15915745..15917442-chr6:16124332..16126940,2	K562	blood:
4	chr6:15907286..15909989-chr6:15915065..15917372,2	MCF-7	breast:
5	chr6:15912597..15914681-chr6:15915197..15917941,2	K562	blood:
6	chr6:15909152..15912123-chr6:15916464..15918319,2	MCF-7	breast:
7	chr6:15912177..15914681-chr6:15915197..15917941,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10085361	0.81[CEU][hapmap]
rs1040469	0.81[CEU][hapmap]
rs1074130	0.90[ASN][1000 genomes]
rs1342742	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1539421	0.81[CEU][hapmap]
rs16877316	0.81[CEU][hapmap]
rs16877348	0.81[CEU][hapmap]
rs220928	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4365933	0.81[CEU][hapmap]
rs4712262	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs4712265	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4716011	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs61161120	0.80[ASN][1000 genomes]
rs61259710	0.92[ASN][1000 genomes]
rs6459415	0.82[CEU][hapmap]
rs6459420	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs6459421	0.88[ASN][1000 genomes]
rs6459429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6904123	0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs6909164	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6936104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs707841	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs707842	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs742384	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs760957	0.89[CEU][hapmap]
rs7752521	0.81[CEU][hapmap]
rs7775142	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs808361	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs909845	0.90[ASN][1000 genomes]
rs926455	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs9370840	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9383088	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9383092	0.81[CEU][hapmap]
rs9476971	0.81[CEU][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15913600-15920200	Weak transcription	Placenta	Placenta
2	chr6:15914000-15921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:15915800-15917000	Enhancers	Left Ventricle	heart
4	chr6:15916200-15917800	Enhancers	K562	blood
5	chr6:15916400-15917000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:15916800-15917200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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