Variant report

Variant	rs707842
Chromosome Location	chr6:15916537-15916538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15915036..15924551-chr6:16129181..16135842,15	K562	blood:
2	chr6:15904943..15906972-chr6:15916201..15918041,2	K562	blood:
3	chr6:15915745..15917442-chr6:16124332..16126940,2	K562	blood:
4	chr6:15907286..15909989-chr6:15915065..15917372,2	MCF-7	breast:
5	chr6:15912597..15914681-chr6:15915197..15917941,2	K562	blood:
6	chr6:15909152..15912123-chr6:15916464..15918319,2	MCF-7	breast:
7	chr6:15912177..15914681-chr6:15915197..15917941,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1074130	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1342742	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs220928	0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs4712262	0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs4712265	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4716006	0.90[EUR][1000 genomes]
rs61161120	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61259710	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6459419	1.00[EUR][1000 genomes]
rs6459420	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs6459421	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6459429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6904123	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6909164	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6930691	0.90[EUR][1000 genomes]
rs6936104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs707841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742384	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs742385	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7775142	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs808361	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs909845	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs926455	0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs9370840	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9383088	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15913600-15916800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15913600-15920200	Weak transcription	Placenta	Placenta
3	chr6:15914000-15921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:15915600-15916800	Enhancers	Fetal Heart	heart
5	chr6:15915800-15916600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:15915800-15916800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:15915800-15917000	Enhancers	Left Ventricle	heart
8	chr6:15916200-15917800	Enhancers	K562	blood
9	chr6:15916400-15917000	Enhancers	HUES64 Cell Line	embryonic stem cell

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