Variant report

Variant	rs7775142
Chromosome Location	chr6:15897231-15897232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15892800..15899119-chr6:16126817..16134608,27	K562	blood:
2	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
3	chr6:15892105..15894274-chr6:15895496..15897535,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1074130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220928	0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs4712262	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs4712265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4716006	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61161120	1.00[EUR][1000 genomes]
rs61259710	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6459415	0.86[CHB][hapmap]
rs6459419	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6459420	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6459421	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459429	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6904123	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6909164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6930691	0.90[EUR][1000 genomes]
rs6936104	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs707841	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs707842	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs742384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs742385	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs808361	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs909845	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926455	1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370840	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15889600-15897400	Weak transcription	Spleen	Spleen
2	chr6:15894200-15898000	Enhancers	Fetal Intestine Small	intestine
3	chr6:15894400-15903000	Enhancers	Placenta	Placenta
4	chr6:15894600-15901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:15895000-15897600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:15895000-15897800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:15895400-15898800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:15895800-15898000	Enhancers	Fetal Intestine Large	intestine
9	chr6:15895800-15898600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:15895800-15899000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:15895800-15899000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:15896000-15898000	Enhancers	Fetal Stomach	stomach
13	chr6:15896000-15898600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:15896000-15899000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:15896000-15899000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:15896200-15898200	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:15896200-15899000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:15896400-15897400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:15896400-15898000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:15896400-15898200	Enhancers	Fetal Muscle Leg	muscle
21	chr6:15896600-15897400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:15896600-15898000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:15896600-15898600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:15896800-15897400	Enhancers	Stomach Smooth Muscle	stomach
25	chr6:15896800-15897800	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr6:15897000-15897400	Enhancers	Colon Smooth Muscle	Colon
27	chr6:15897000-15897600	Weak transcription	Pancreas	Pancrea
28	chr6:15897000-15898800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:15897200-15897400	Enhancers	Liver	Liver
30	chr6:15897200-15897400	Active TSS	Ovary	ovary
31	chr6:15897200-15897400	Active TSS	Right Atrium	heart
32	chr6:15897200-15897600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:15897200-15897600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:15897200-15897600	Flanking Active TSS	Fetal Lung	lung
35	chr6:15897200-15897600	Flanking Active TSS	NHDF-Ad	bronchial
36	chr6:15897200-15897800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:15897200-15897800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:15897200-15897800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:15897200-15897800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:15897200-15897800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:15897200-15897800	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr6:15897200-15897800	Flanking Active TSS	HUVEC	blood vessel
43	chr6:15897200-15898000	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr6:15897200-15898000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:15897200-15898000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:15897200-15898000	Enhancers	Esophagus	oesophagus
47	chr6:15897200-15898000	Enhancers	Rectal Smooth Muscle	rectum
48	chr6:15897200-15898000	Enhancers	Stomach Mucosa	stomach
49	chr6:15897200-15898000	Flanking Active TSS	K562	blood
50	chr6:15897200-15898000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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