Variant report

Variant	rs6459429
Chromosome Location	chr6:15931563-15931564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15930578..15932572-chr6:16129445..16130955,2	K562	blood:
2	chr6:15930578..15933291-chr6:16126931..16132452,5	K562	blood:
3	chr6:15920045..15922599-chr6:15930327..15932865,2	K562	blood:
4	chr6:15768943..15771188-chr6:15931054..15932857,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1074130	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1342742	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs220928	0.82[ASW][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs4712262	0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs4712265	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4716006	0.90[EUR][1000 genomes]
rs61161120	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61259710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459419	1.00[EUR][1000 genomes]
rs6459420	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs6459421	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6904123	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs6909164	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs6930691	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6936104	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs707842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs742384	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs742385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7775142	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs808361	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs909845	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs926455	0.93[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs9370840	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9383088	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15928000-15936400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15930600-15931600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:15930800-15931600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
4	chr6:15930800-15931800	ZNF genes & repeats	Placenta	Placenta
5	chr6:15931000-15931600	ZNF genes & repeats	Adipose Nuclei	Adipose

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