Variant report

Variant	rs808361
Chromosome Location	chr6:15880378-15880379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15875079..15877964-chr6:15880093..15881980,2	K562	blood:
3	chr6:15871773..15874343-chr6:15880134..15881687,2	K562	blood:
4	chr6:15879420..15881947-chr6:15888551..15890948,2	MCF-7	breast:
5	chr6:15879446..15881923-chr6:15881943..15885281,3	K562	blood:
6	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
7	chr6:15878944..15881534-chr6:16131445..16134111,2	K562	blood:
8	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
9	chr6:15684844..15687441-chr6:15880155..15881679,2	K562	blood:
10	chr6:15871704..15874710-chr6:15878937..15881687,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1074130	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1342742	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs220928	0.82[ASW][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs220929	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs220930	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4712262	0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4712265	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4716006	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61161120	1.00[EUR][1000 genomes]
rs61259710	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6459415	0.87[JPT][hapmap]
rs6459419	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6459420	0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs6459421	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6459429	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6904123	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6909164	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs6913590	0.80[JPT][hapmap]
rs6930691	0.90[EUR][1000 genomes]
rs6936104	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs707841	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes]
rs707842	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs742384	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs742385	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7775142	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs909845	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs926455	0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9370840	0.84[CHB][hapmap];0.86[JPT][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383088	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs808361	GMPR	cis	lymphoblastoid	seeQTL

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15876400-15882200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:15876600-15882000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:15876600-15882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15879000-15880600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:15879000-15881600	Weak transcription	Lung	lung
8	chr6:15879000-15882200	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:15879200-15880800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:15879200-15880800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:15879200-15880800	Enhancers	Colon Smooth Muscle	Colon
12	chr6:15879200-15880800	Enhancers	Fetal Lung	lung
13	chr6:15879200-15880800	Enhancers	Fetal Muscle Leg	muscle
14	chr6:15879200-15881000	Enhancers	Adipose Nuclei	Adipose
15	chr6:15879200-15881000	Enhancers	NHDF-Ad	bronchial
16	chr6:15879400-15880400	Enhancers	Fetal Intestine Small	intestine
17	chr6:15879400-15880600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:15879400-15880600	Enhancers	Fetal Intestine Large	intestine
19	chr6:15879400-15880600	Enhancers	NHLF	lung
20	chr6:15879400-15880800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:15879400-15880800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:15879400-15880800	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr6:15879400-15880800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:15879400-15880800	Enhancers	Fetal Stomach	stomach
25	chr6:15879400-15880800	Enhancers	Rectal Smooth Muscle	rectum
26	chr6:15879400-15880800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:15879400-15881000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:15879600-15880400	Enhancers	Primary T cells from cord blood	blood
29	chr6:15879600-15880400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:15879600-15880600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:15879600-15880600	Enhancers	Ovary	ovary
32	chr6:15879600-15880800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:15879600-15880800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:15879600-15880800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:15879600-15880800	Enhancers	Fetal Kidney	kidney
36	chr6:15879600-15880800	Enhancers	Dnd41	blood
37	chr6:15879600-15881000	Enhancers	HUVEC	blood vessel
38	chr6:15879800-15880400	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:15879800-15880600	Flanking Active TSS	GM12878-XiMat	blood
40	chr6:15879800-15880800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:15879800-15880800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:15879800-15880800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr6:15879800-15880800	Enhancers	Thymus	Thymus
44	chr6:15879800-15881000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:15879800-15882000	Enhancers	K562	blood
46	chr6:15880000-15880400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:15880000-15880600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:15880000-15880600	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr6:15880000-15880600	Enhancers	Fetal Thymus	thymus
50	chr6:15880000-15880600	Enhancers	Rectal Mucosa Donor 31	rectum

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