Variant report

Variant	rs220928
Chromosome Location	chr6:15852390-15852391
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15851159..15853567-chr6:15909495..15911711,2	K562	blood:
2	chr6:15850587..15852774-chr6:16127746..16130756,3	MCF-7	breast:
3	chr6:15847371..15849315-chr6:15851002..15853274,2	K562	blood:
4	chr6:15849502..15852493-chr6:15865904..15869500,3	K562	blood:
5	chr6:15849343..15852603-chr6:16131600..16134904,3	K562	blood:
6	chr6:15851968..15854931-chr6:16143231..16145085,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1342742	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs220929	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712262	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712265	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4716006	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6459415	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs6459419	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6459420	0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[ASN][1000 genomes]
rs6459429	0.82[ASW][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs6904123	0.85[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6909164	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs6936104	0.82[ASW][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs707841	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs707842	0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs742384	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs742385	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7775142	0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs808361	0.82[ASW][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs926455	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9370840	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs9383088	0.93[CHB][hapmap];0.81[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs220928	GMPR	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15843000-15855400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:15850600-15855400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:15850800-15855400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:15850800-15855400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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