Variant report

Variant	rs4712262
Chromosome Location	chr6:15857391-15857392
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15855431..15860287-chr6:16128372..16131374,6	K562	blood:
2	chr6:15856687..15858368-chr6:15877449..15879540,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1074130	0.86[EUR][1000 genomes]
rs1342742	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs220928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220929	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220930	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712265	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs4716006	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61161120	0.86[EUR][1000 genomes]
rs61259710	0.86[EUR][1000 genomes]
rs6459415	0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs6459419	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6459420	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs6459421	0.86[EUR][1000 genomes]
rs6459429	0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs6904123	0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6909164	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs6936104	0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs707841	0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs707842	0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs742384	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs742385	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7775142	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs808361	0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs909845	0.86[EUR][1000 genomes]
rs926455	0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9370840	0.92[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs9383088	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15856000-15857800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:15856000-15860400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:15856000-15860600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:15856000-15861200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:15856200-15858200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:15856200-15860600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:15856400-15858200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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