Variant report

Variant	rs1074130
Chromosome Location	chr6:15904348-15904349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15902506..15905149-chr6:15905227..15906960,2	MCF-7	breast:
2	chr6:15903215..15905217-chr6:15920542..15922954,2	K562	blood:
3	chr6:15895140..15896852-chr6:15901818..15904507,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1342742	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712262	0.86[EUR][1000 genomes]
rs4712265	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4716006	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61161120	1.00[EUR][1000 genomes]
rs61259710	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6459419	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6459420	0.85[ASN][1000 genomes]
rs6459421	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459429	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6904123	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6930691	0.90[EUR][1000 genomes]
rs6936104	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs707841	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs707842	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs742384	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs742385	0.90[ASN][1000 genomes]
rs7775142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808361	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs909845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926455	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383088	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
2	chr6:15898600-15905000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:15899000-15905200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:15900400-15908000	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:15901600-15905400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:15901600-15906200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:15901800-15904600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:15902000-15904600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:15902000-15904800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:15902000-15905200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:15902000-15905200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:15902000-15906200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:15902200-15904400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:15902200-15904600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:15902200-15905400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:15902200-15906200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:15902400-15905400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:15902400-15906200	Weak transcription	Spleen	Spleen
19	chr6:15902400-15906400	Weak transcription	Fetal Thymus	thymus
20	chr6:15902400-15907800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:15902400-15908400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:15902600-15904600	Weak transcription	Primary B cells from cord blood	blood
23	chr6:15902600-15905600	Weak transcription	Fetal Intestine Large	intestine
24	chr6:15902600-15907400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:15902800-15905400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:15902800-15905800	Enhancers	GM12878-XiMat	blood
27	chr6:15903200-15904600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:15903600-15904800	Weak transcription	Placenta	Placenta
29	chr6:15903600-15905200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:15904000-15904400	Weak transcription	K562	blood
31	chr6:15904200-15906400	Enhancers	Adipose Nuclei	Adipose

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