Variant report

Variant	rs6459420
Chromosome Location	chr6:15873122-15873123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15861714..15863237-chr6:15871129..15873974,2	K562	blood:
2	chr6:15872117..15874631-chr6:15875616..15878274,2	K562	blood:
3	chr6:15869215..15876030-chr6:16126980..16132874,9	K562	blood:
4	chr6:15871704..15874710-chr6:15878937..15881687,3	K562	blood:
5	chr6:15871773..15874343-chr6:15880134..15881687,2	K562	blood:
6	chr6:15870383..15873187-chr6:16133661..16135212,2	K562	blood:
7	chr6:15870044..15875331-chr6:16125513..16132572,8	K562	blood:
8	chr6:15872228..15874969-chr6:15877326..15879276,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1074130	0.85[ASN][1000 genomes]
rs1342742	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1569590	0.89[YRI][hapmap]
rs1569591	0.80[YRI][hapmap]
rs1569592	0.89[YRI][hapmap]
rs2021900	0.89[YRI][hapmap]
rs2022462	0.89[YRI][hapmap]
rs2092340	0.88[YRI][hapmap]
rs220928	0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[ASN][1000 genomes]
rs220929	0.89[ASN][1000 genomes]
rs220930	0.89[ASN][1000 genomes]
rs4113597	0.89[YRI][hapmap]
rs4712262	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs4712263	0.89[YRI][hapmap]
rs4712265	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs4716006	0.93[ASN][1000 genomes]
rs6459415	0.86[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs6459419	0.99[ASN][1000 genomes]
rs6459421	0.87[ASN][1000 genomes]
rs6459429	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs6904123	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6909164	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6913590	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs6925815	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs6936104	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs707841	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs707842	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs726966	0.89[YRI][hapmap]
rs742384	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs742385	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs7775142	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs808361	0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs909845	0.85[ASN][1000 genomes]
rs926455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9370840	1.00[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs9383088	1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs9396614	0.88[YRI][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870000-15873200	Enhancers	HUVEC	blood vessel
2	chr6:15870200-15873200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15870600-15873800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:15870600-15873800	Enhancers	NHDF-Ad	bronchial
5	chr6:15870600-15875000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:15871000-15873200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:15871000-15873200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:15871000-15875600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:15871200-15875000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:15871400-15873400	Enhancers	NHLF	lung
12	chr6:15871600-15873200	Enhancers	Fetal Kidney	kidney
13	chr6:15871600-15873600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:15871600-15873800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:15871600-15875000	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:15872000-15874000	Weak transcription	Right Atrium	heart
17	chr6:15872200-15879400	Weak transcription	Fetal Intestine Small	intestine
18	chr6:15872400-15873400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:15872400-15873600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:15872400-15873600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:15872600-15873200	Enhancers	Small Intestine	intestine
22	chr6:15872600-15874200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:15872600-15879200	Weak transcription	Adipose Nuclei	Adipose
24	chr6:15872800-15873200	Enhancers	Fetal Lung	lung
25	chr6:15872800-15873200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:15872800-15873400	Enhancers	HSMM	muscle
27	chr6:15872800-15873400	Enhancers	K562	blood
28	chr6:15872800-15873800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:15873000-15873400	Enhancers	Lung	lung
30	chr6:15873000-15875200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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