Variant report

Variant	rs2092340
Chromosome Location	chr6:15896295-15896296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15892800..15899119-chr6:16126817..16134608,27	K562	blood:
2	chr6:15853562..15855771-chr6:15893985..15896644,2	K562	blood:
3	chr6:15895140..15896852-chr6:15901818..15904507,2	K562	blood:
4	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
5	chr6:15894650..15896961-chr6:16137477..16139120,2	K562	blood:
6	chr6:15892105..15894274-chr6:15895496..15897535,2	K562	blood:
7	chr6:15894477..15896560-chr6:15907107..15909590,2	MCF-7	breast:
8	chr6:15894595..15896880-chr6:16047556..16049298,2	K562	blood:
9	chr6:15895394..15897101-chr6:15905785..15908150,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1569590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1569591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022462	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066399	0.81[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2066400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066401	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2327925	0.87[ASN][1000 genomes]
rs4113597	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716007	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716008	0.98[ASN][1000 genomes]
rs4716009	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716010	1.00[ASN][1000 genomes]
rs6459417	0.80[CEU][hapmap]
rs6459420	0.88[YRI][hapmap]
rs6459422	0.98[ASN][1000 genomes]
rs6459423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459425	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906138	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925815	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939072	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940343	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs760958	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760959	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs760960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7753278	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7753426	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7753453	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754469	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754613	0.95[ASN][1000 genomes]
rs879299	1.00[ASN][1000 genomes]
rs881018	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs909846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932377	1.00[CEU][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358073	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396613	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15889600-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:15889600-15897400	Weak transcription	Spleen	Spleen
3	chr6:15890200-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:15893000-15897200	Weak transcription	Right Atrium	heart
5	chr6:15893400-15896800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:15893600-15897000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:15894200-15898000	Enhancers	Fetal Intestine Small	intestine
8	chr6:15894400-15903000	Enhancers	Placenta	Placenta
9	chr6:15894600-15901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:15895000-15897600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:15895000-15897800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:15895400-15896600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:15895400-15896600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:15895400-15898800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:15895600-15896800	Flanking Active TSS	K562	blood
16	chr6:15895600-15897200	Weak transcription	GM12878-XiMat	blood
17	chr6:15895800-15896400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:15895800-15896800	Enhancers	Esophagus	oesophagus
19	chr6:15895800-15897200	Enhancers	Fetal Lung	lung
20	chr6:15895800-15897200	Weak transcription	NHEK	skin
21	chr6:15895800-15898000	Enhancers	Fetal Intestine Large	intestine
22	chr6:15895800-15898600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:15895800-15899000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:15895800-15899000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:15896000-15897200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:15896000-15898000	Enhancers	Fetal Stomach	stomach
27	chr6:15896000-15898600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:15896000-15899000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr6:15896000-15899000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr6:15896200-15896600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:15896200-15898200	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:15896200-15899000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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