Variant report

Variant	rs9358073
Chromosome Location	chr6:15888923-15888924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15888062..15891334-chr6:16128088..16131243,5	K562	blood:
2	chr6:15879420..15881947-chr6:15888551..15890948,2	MCF-7	breast:
3	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
4	chr6:15888746..15892140-chr6:16132269..16136668,3	K562	blood:
5	chr6:15888375..15890886-chr6:16129099..16132102,4	K562	blood:
6	chr6:15887938..15889761-chr6:16129452..16131326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1569591	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569592	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021900	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022462	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066399	0.88[ASN][1000 genomes]
rs2066400	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066401	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092340	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327925	0.87[ASN][1000 genomes]
rs4113597	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712263	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716007	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716008	0.98[ASN][1000 genomes]
rs4716009	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716010	1.00[ASN][1000 genomes]
rs6459422	0.98[ASN][1000 genomes]
rs6459423	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459425	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906138	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913590	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925815	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932456	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939072	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940343	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726966	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs760958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760959	0.91[ASN][1000 genomes]
rs760960	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7753278	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7753426	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7753453	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754469	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754613	0.95[ASN][1000 genomes]
rs879299	1.00[ASN][1000 genomes]
rs881018	0.98[ASN][1000 genomes]
rs909846	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296992	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349989	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396613	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396614	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
2	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15887000-15889800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:15887400-15889000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:15887400-15889000	Enhancers	Primary B cells from cord blood	blood
6	chr6:15887400-15889000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:15887400-15889600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:15887400-15889600	Enhancers	Spleen	Spleen
9	chr6:15887400-15890000	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:15887400-15890400	Enhancers	K562	blood
11	chr6:15887600-15889400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:15887600-15890200	Enhancers	Adipose Nuclei	Adipose
13	chr6:15887800-15889200	Weak transcription	Lung	lung
14	chr6:15888200-15889000	Enhancers	GM12878-XiMat	blood
15	chr6:15888200-15889400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:15888200-15889400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:15888200-15890400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:15888200-15892400	Weak transcription	Right Atrium	heart
19	chr6:15888400-15889400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:15888600-15889600	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:15888600-15892400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:15888800-15890800	Enhancers	Monocytes-CD14+_RO01746	blood

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