Variant report

Variant	rs881018
Chromosome Location	chr6:15883689-15883690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15696534..15698771-chr6:15883531..15885390,2	K562	blood:
2	chr6:15879446..15881923-chr6:15881943..15885281,3	K562	blood:
3	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
4	chr6:15876663..15879393-chr6:15883432..15885018,2	K562	blood:
5	chr6:15882525..15884862-chr6:15922870..15925036,2	K562	blood:
6	chr6:15877644..15879393-chr6:15883432..15885191,2	K562	blood:
7	chr6:15883256..15885038-chr6:16130440..16132309,2	MCF-7	breast:
8	chr6:15882852..15885272-chr6:16128267..16130804,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1013050	0.88[CEU][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12212931	0.81[AMR][1000 genomes]
rs1569590	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs1569591	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs1569592	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2021900	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2022462	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2066399	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2066400	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2066401	0.89[ASN][1000 genomes]
rs2092340	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2327925	0.86[ASN][1000 genomes]
rs4113597	0.90[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs4712263	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs4716007	0.99[ASN][1000 genomes]
rs4716008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716009	0.90[CHB][hapmap];0.98[ASN][1000 genomes]
rs4716010	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459422	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459423	0.98[ASN][1000 genomes]
rs6459425	0.98[ASN][1000 genomes]
rs6903604	0.88[CEU][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6906138	0.98[ASN][1000 genomes]
rs6910382	0.81[AMR][1000 genomes]
rs6913590	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6925815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6932456	0.98[ASN][1000 genomes]
rs6939072	0.97[ASN][1000 genomes]
rs6940343	0.98[ASN][1000 genomes]
rs726966	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs760958	0.98[ASN][1000 genomes]
rs760959	0.90[ASN][1000 genomes]
rs760960	0.97[ASN][1000 genomes]
rs7753278	0.94[ASN][1000 genomes]
rs7753426	0.94[ASN][1000 genomes]
rs7753453	0.97[ASN][1000 genomes]
rs7754469	0.94[ASN][1000 genomes]
rs7754613	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs879299	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs909846	0.98[ASN][1000 genomes]
rs9296992	0.98[ASN][1000 genomes]
rs932377	0.98[ASN][1000 genomes]
rs9349989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9358073	0.98[ASN][1000 genomes]
rs9370842	0.83[CEU][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9396613	0.98[ASN][1000 genomes]
rs9396614	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
4	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:15880800-15885600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:15880800-15885800	Weak transcription	Psoas Muscle	Psoas
7	chr6:15881800-15883800	Enhancers	Fetal Muscle Trunk	muscle
8	chr6:15881800-15883800	Enhancers	Fetal Muscle Leg	muscle
9	chr6:15882000-15885800	Weak transcription	Spleen	Spleen
10	chr6:15882000-15887200	Weak transcription	GM12878-XiMat	blood
11	chr6:15882000-15887400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:15882000-15887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:15882000-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:15882000-15887400	Weak transcription	K562	blood
15	chr6:15882200-15884400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:15882200-15887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:15882200-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:15882200-15887400	Weak transcription	Lung	lung
19	chr6:15882400-15885800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:15882400-15886800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:15883000-15883800	Enhancers	HUVEC	blood vessel
22	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
23	chr6:15883600-15887400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:15883600-15887600	Weak transcription	Adipose Nuclei	Adipose

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