Variant report

Variant	rs9370842
Chromosome Location	chr6:15908642-15908643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15894477..15896560-chr6:15907107..15909590,2	MCF-7	breast:
2	chr6:15854561..15856681-chr6:15908363..15910896,2	K562	blood:
3	chr6:15906619..15910690-chr6:16127515..16130583,3	MCF-7	breast:
4	chr6:15908228..15908960-chr6:16128688..16129489,2	MCF-7	breast:
5	chr6:15904841..15911387-chr6:16127865..16132183,18	K562	blood:
6	chr6:15907017..15909821-chr6:15918097..15920642,2	K562	blood:
7	chr6:15907905..15909832-chr6:16133533..16135253,2	K562	blood:
8	chr6:15769393..15771029-chr6:15905967..15908693,2	MCF-7	breast:
9	chr6:15898536..15902063-chr6:15905932..15909819,5	K562	blood:
10	chr6:15906496..15909467-chr6:16138349..16140089,2	K562	blood:
11	chr6:15906805..15909911-chr6:15918758..15922441,3	MCF-7	breast:
12	chr6:15907286..15909989-chr6:15915065..15917372,2	MCF-7	breast:
13	chr6:15905525..15908697-chr6:16128021..16130958,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1013050	0.94[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10949319	0.87[YRI][hapmap]
rs12211264	0.90[ASN][1000 genomes]
rs12212931	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2066399	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4716008	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4716010	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6459422	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6903604	1.00[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6910382	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs879299	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs881018	0.83[CEU][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
2	chr6:15904800-15911600	Enhancers	Placenta	Placenta
3	chr6:15904800-15913600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15905000-15911000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:15906200-15910400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:15906400-15912000	Weak transcription	Adipose Nuclei	Adipose
7	chr6:15906600-15912200	Weak transcription	Spleen	Spleen
8	chr6:15906800-15910200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:15906800-15910600	Enhancers	GM12878-XiMat	blood
10	chr6:15906800-15912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:15907000-15908800	Weak transcription	Fetal Lung	lung
12	chr6:15907000-15909400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:15907000-15912000	Weak transcription	Fetal Kidney	kidney
14	chr6:15907000-15912200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:15907000-15912200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:15907400-15908800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:15907600-15911000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:15907600-15911000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:15907800-15908800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:15907800-15911000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:15908000-15908800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:15908000-15909000	Flanking Active TSS	K562	blood
23	chr6:15908000-15909400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:15908000-15910200	Enhancers	Fetal Intestine Small	intestine
25	chr6:15908000-15910800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr6:15908000-15910800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:15908000-15912800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:15908200-15908800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:15908200-15909200	Enhancers	Fetal Intestine Large	intestine
30	chr6:15908200-15912600	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:15908400-15908800	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:15908400-15909000	Enhancers	Stomach Mucosa	stomach
33	chr6:15908400-15909200	Enhancers	Esophagus	oesophagus
34	chr6:15908400-15909200	Enhancers	NHEK	skin
35	chr6:15908400-15910400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:15908400-15910600	Enhancers	H1 Cell Line	embryonic stem cell
37	chr6:15908400-15912400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr6:15908600-15912400	Weak transcription	Primary monocytes fromperipheralblood	blood

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