Variant report

Variant	rs10949319
Chromosome Location	chr6:15876051-15876052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1000116	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1000117	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10080664	0.83[ASN][1000 genomes]
rs1013050	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1883448	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459418	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs6903604	0.91[JPT][hapmap];0.91[YRI][hapmap];0.82[ASN][1000 genomes]
rs9296991	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9370842	0.87[YRI][hapmap]
rs9396611	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs9464837	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9464838	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476962	0.86[CHB][hapmap]
rs9476967	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15872200-15879400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15872600-15879200	Weak transcription	Adipose Nuclei	Adipose
4	chr6:15873200-15876600	Weak transcription	HUVEC	blood vessel
5	chr6:15873600-15879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:15873600-15879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:15873800-15876400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:15875000-15876600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:15875000-15879400	Weak transcription	NHLF	lung
10	chr6:15875000-15880000	Weak transcription	Psoas Muscle	Psoas
11	chr6:15875200-15876400	Weak transcription	NHDF-Ad	bronchial
12	chr6:15875200-15876600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:15875400-15877200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:15875600-15876600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:15875800-15878600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:15876000-15876200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:15876000-15876400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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