Variant report

Variant	rs9296991
Chromosome Location	chr6:15875289-15875290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1000116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1000117	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10080664	0.83[ASN][1000 genomes]
rs1013050	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10949319	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1883448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220926	0.82[CHB][hapmap]
rs6459418	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6903604	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9396611	0.91[JPT][hapmap]
rs9464837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464838	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9296991	MYLIP	cis	cerebellum	SCAN
rs9296991	TBC1D7	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15871000-15875600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:15872200-15879400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:15872600-15879200	Weak transcription	Adipose Nuclei	Adipose
5	chr6:15873200-15875600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:15873200-15875800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:15873200-15876600	Weak transcription	HUVEC	blood vessel
8	chr6:15873600-15879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:15873600-15879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:15873800-15876400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:15874800-15876000	Weak transcription	GM12878-XiMat	blood
12	chr6:15875000-15875400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:15875000-15876000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:15875000-15876600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:15875000-15879400	Weak transcription	NHLF	lung
16	chr6:15875000-15880000	Weak transcription	Psoas Muscle	Psoas
17	chr6:15875200-15876400	Weak transcription	NHDF-Ad	bronchial
18	chr6:15875200-15876600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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