Variant report

Variant	rs1000117
Chromosome Location	chr6:15873989-15873990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15872117..15874631-chr6:15875616..15878274,2	K562	blood:
2	chr6:15869215..15876030-chr6:16126980..16132874,9	K562	blood:
3	chr6:15871704..15874710-chr6:15878937..15881687,3	K562	blood:
4	chr6:15871773..15874343-chr6:15880134..15881687,2	K562	blood:
5	chr6:15870044..15875331-chr6:16125513..16132572,8	K562	blood:
6	chr6:15872228..15874969-chr6:15877326..15879276,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10080664	0.83[ASN][1000 genomes]
rs1013050	0.83[ASN][1000 genomes]
rs10949319	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1883448	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6459418	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6903604	0.83[ASN][1000 genomes]
rs9296991	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464837	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464838	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15875000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:15871000-15875600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:15871200-15875000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:15871600-15875000	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:15872000-15874000	Weak transcription	Right Atrium	heart
7	chr6:15872200-15879400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:15872600-15874200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:15872600-15879200	Weak transcription	Adipose Nuclei	Adipose
10	chr6:15873000-15875200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:15873200-15875200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:15873200-15875600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:15873200-15875800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:15873200-15876600	Weak transcription	HUVEC	blood vessel
15	chr6:15873600-15874800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:15873600-15879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:15873600-15879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:15873800-15874200	Weak transcription	NHDF-Ad	bronchial
19	chr6:15873800-15874800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:15873800-15874800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:15873800-15875000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:15873800-15875000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:15873800-15876400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links