Variant report

Variant	rs1013050
Chromosome Location	chr6:15886077-15886078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
3	chr6:15884328..15886585-chr6:15962945..15965277,2	K562	blood:
4	chr6:15880603..15882867-chr6:15885643..15887252,2	K562	blood:
5	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
6	chr6:15883964..15886917-chr6:15959495..15962410,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1000116	0.83[ASN][1000 genomes]
rs1000117	0.83[ASN][1000 genomes]
rs10949319	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs12211264	0.80[ASN][1000 genomes]
rs12212931	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1883448	0.81[ASW][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2066399	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4716008	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4716010	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6459422	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6903604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910382	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7754613	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs879299	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs881018	0.88[CEU][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9296991	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9370842	0.94[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383086	0.85[ASN][1000 genomes]
rs9396611	0.82[JPT][hapmap]
rs9464837	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9464838	0.83[ASN][1000 genomes]
rs9476967	0.82[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15880600-15887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15880600-15887600	Weak transcription	Right Atrium	heart
3	chr6:15882000-15887200	Weak transcription	GM12878-XiMat	blood
4	chr6:15882000-15887400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:15882000-15887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:15882000-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:15882000-15887400	Weak transcription	K562	blood
8	chr6:15882200-15887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:15882200-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:15882200-15887400	Weak transcription	Lung	lung
11	chr6:15882400-15886800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
13	chr6:15883600-15887400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:15883600-15887600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:15883800-15887600	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:15885600-15886200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:15885800-15886200	Enhancers	Psoas Muscle	Psoas
18	chr6:15885800-15886400	Enhancers	Spleen	Spleen
19	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:15886000-15887600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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