Variant report

Variant	rs1883448
Chromosome Location	chr6:15877727-15877728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15872228..15874969-chr6:15877326..15879276,3	K562	blood:
3	chr6:15875079..15877964-chr6:15880093..15881980,2	K562	blood:
4	chr6:15877644..15879393-chr6:15883432..15885191,2	K562	blood:
5	chr6:15876663..15879393-chr6:15883432..15885018,2	K562	blood:
6	chr6:15856687..15858368-chr6:15877449..15879540,2	K562	blood:
7	chr6:15872117..15874631-chr6:15875616..15878274,2	K562	blood:
8	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
9	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1000116	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1000117	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10080664	0.82[ASN][1000 genomes]
rs1013050	0.81[ASW][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10949319	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220926	0.82[CHB][hapmap]
rs6459418	0.95[CEU][hapmap];0.87[CHB][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6903604	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9296991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396611	0.91[JPT][hapmap];0.81[MKK][hapmap]
rs9464837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9464838	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476967	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1883448	MYLIP	cis	cerebellum	SCAN
rs1883448	TBC1D7	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15872200-15879400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15872600-15879200	Weak transcription	Adipose Nuclei	Adipose
4	chr6:15873600-15879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:15873600-15879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:15875000-15879400	Weak transcription	NHLF	lung
7	chr6:15875000-15880000	Weak transcription	Psoas Muscle	Psoas
8	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:15875800-15878600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:15876400-15882200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:15876600-15879600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:15876600-15882000	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:15876600-15882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:15876800-15879000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:15876800-15879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:15877200-15879200	Weak transcription	NHDF-Ad	bronchial
17	chr6:15877200-15879400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:15877200-15879400	Weak transcription	GM12878-XiMat	blood
19	chr6:15877200-15879600	Weak transcription	HUVEC	blood vessel
20	chr6:15877200-15879800	Weak transcription	Placenta Amnion	Placenta Amnion

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