Variant report

Variant	rs10080664
Chromosome Location	chr6:15864284-15864285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1000116	0.83[ASN][1000 genomes]
rs1000117	0.83[ASN][1000 genomes]
rs1013050	0.82[JPT][hapmap]
rs10949319	0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1883448	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6903604	0.82[JPT][hapmap]
rs7748897	0.91[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9296991	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9370836	0.83[LWK][hapmap]
rs9383086	0.81[ASN][1000 genomes]
rs9396611	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs9464837	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9464838	0.83[ASN][1000 genomes]
rs9476962	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9476967	0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10080664	TPMT	cis	parietal	SCAN
rs10080664	TBC1D7	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15863400-15872600	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:15864200-15864800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15864200-15866000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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