The 2.0 version of rSNPBase
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Variant report
Variant
rs7748897
Chromosome Location
chr6:15862776-15862777
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr6:15861211..15863837-chr6:16050426..16052847,2
K562
blood:
2
chr6:15861714..15863237-chr6:15871129..15873974,2
K562
blood:
3
chr6:15857919..15863956-chr6:16127859..16131568,7
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000007944
Chromatin interaction
Extended variants information (count: 5 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs10080664
0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs220926
0.86[JPT][hapmap]
rs6459418
0.84[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs9370836
0.81[AMR][1000 genomes]
rs9476962
0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links