Variant report

Variant	rs9476962
Chromosome Location	chr6:15859254-15859255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10080664	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10949319	0.86[CHB][hapmap]
rs220926	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6459418	0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7748897	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370836	0.86[LWK][hapmap]
rs9476959	0.80[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9476962	KCNN4	trans	parietal	SCAN
rs9476962	TBC1D7	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15856000-15860400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15856000-15860600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:15856000-15861200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:15856200-15860600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:15858600-15860400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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