Variant report

Variant	rs4716008
Chromosome Location	chr6:15887857-15887858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
2	chr6:15867696..15869985-chr6:15886465..15888191,2	K562	blood:
3	chr6:15868485..15870238-chr6:15886465..15888111,2	K562	blood:
4	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1013050	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12212931	0.81[AMR][1000 genomes]
rs1569591	0.98[ASN][1000 genomes]
rs1569592	0.98[ASN][1000 genomes]
rs2021900	0.98[ASN][1000 genomes]
rs2022462	0.98[ASN][1000 genomes]
rs2066399	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2066400	0.95[ASN][1000 genomes]
rs2066401	0.89[ASN][1000 genomes]
rs2092340	0.98[ASN][1000 genomes]
rs2327925	0.86[ASN][1000 genomes]
rs4113597	0.98[ASN][1000 genomes]
rs4712263	0.98[ASN][1000 genomes]
rs4716007	0.99[ASN][1000 genomes]
rs4716009	0.98[ASN][1000 genomes]
rs4716010	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459422	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459423	0.98[ASN][1000 genomes]
rs6459425	0.98[ASN][1000 genomes]
rs6903604	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6906138	0.98[ASN][1000 genomes]
rs6910382	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6913590	1.00[ASN][1000 genomes]
rs6925815	1.00[ASN][1000 genomes]
rs6932456	0.98[ASN][1000 genomes]
rs6939072	0.97[ASN][1000 genomes]
rs6940343	0.98[ASN][1000 genomes]
rs726966	0.97[ASN][1000 genomes]
rs760958	0.98[ASN][1000 genomes]
rs760959	0.90[ASN][1000 genomes]
rs760960	0.97[ASN][1000 genomes]
rs7753278	0.94[ASN][1000 genomes]
rs7753426	0.94[ASN][1000 genomes]
rs7753453	0.97[ASN][1000 genomes]
rs7754469	0.94[ASN][1000 genomes]
rs7754613	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs879299	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs881018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909846	0.98[ASN][1000 genomes]
rs9296992	0.98[ASN][1000 genomes]
rs932377	0.98[ASN][1000 genomes]
rs9349989	0.98[ASN][1000 genomes]
rs9358073	0.98[ASN][1000 genomes]
rs9370842	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9396613	0.98[ASN][1000 genomes]
rs9396614	0.98[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
2	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15887000-15889800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:15887400-15888400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:15887400-15888400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15887400-15888600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:15887400-15888600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:15887400-15889000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:15887400-15889000	Enhancers	Primary B cells from cord blood	blood
10	chr6:15887400-15889000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:15887400-15889600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:15887400-15889600	Enhancers	Spleen	Spleen
13	chr6:15887400-15890000	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:15887400-15890400	Enhancers	K562	blood
15	chr6:15887600-15888200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:15887600-15888200	Enhancers	Right Atrium	heart
17	chr6:15887600-15888200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr6:15887600-15888600	Enhancers	Fetal Muscle Leg	muscle
19	chr6:15887600-15888600	Enhancers	NHEK	skin
20	chr6:15887600-15889400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:15887600-15890200	Enhancers	Adipose Nuclei	Adipose
22	chr6:15887800-15888000	Enhancers	GM12878-XiMat	blood
23	chr6:15887800-15888600	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr6:15887800-15888800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr6:15887800-15889200	Weak transcription	Lung	lung

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