Variant report

Variant	rs2327925
Chromosome Location	chr6:15894831-15894832
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15892800..15899119-chr6:16126817..16134608,27	K562	blood:
2	chr6:15853562..15855771-chr6:15893985..15896644,2	K562	blood:
3	chr6:15894030..15895830-chr6:16119624..16122566,2	K562	blood:
4	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
5	chr6:15894650..15896961-chr6:16137477..16139120,2	K562	blood:
6	chr6:15894477..15896560-chr6:15907107..15909590,2	MCF-7	breast:
7	chr6:15894595..15896880-chr6:16047556..16049298,2	K562	blood:
8	chr6:15892870..15894834-chr6:16149062..16151137,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rs_ID	r²[population]
rs1569591	0.87[ASN][1000 genomes]
rs1569592	0.87[ASN][1000 genomes]
rs2021900	0.87[ASN][1000 genomes]
rs2022462	0.87[ASN][1000 genomes]
rs2066400	0.83[ASN][1000 genomes]
rs2092340	0.87[ASN][1000 genomes]
rs4113597	0.87[ASN][1000 genomes]
rs4712263	0.87[ASN][1000 genomes]
rs4716007	0.87[ASN][1000 genomes]
rs4716008	0.86[ASN][1000 genomes]
rs4716009	0.87[ASN][1000 genomes]
rs4716010	0.87[ASN][1000 genomes]
rs6459422	0.86[ASN][1000 genomes]
rs6459423	0.87[ASN][1000 genomes]
rs6459425	0.87[ASN][1000 genomes]
rs6906138	0.87[ASN][1000 genomes]
rs6913590	0.86[ASN][1000 genomes]
rs6925815	0.86[ASN][1000 genomes]
rs6932456	0.87[ASN][1000 genomes]
rs6939072	0.86[ASN][1000 genomes]
rs6940343	0.87[ASN][1000 genomes]
rs726966	0.86[ASN][1000 genomes]
rs760958	0.87[ASN][1000 genomes]
rs760959	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs760960	0.84[ASN][1000 genomes]
rs7753278	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7753426	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7753453	0.86[ASN][1000 genomes]
rs7754469	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7754613	0.89[ASN][1000 genomes]
rs879299	0.87[ASN][1000 genomes]
rs881018	0.86[ASN][1000 genomes]
rs909846	0.87[ASN][1000 genomes]
rs9296992	0.87[ASN][1000 genomes]
rs932377	0.87[ASN][1000 genomes]
rs9349989	0.87[ASN][1000 genomes]
rs9358073	0.87[ASN][1000 genomes]
rs9396613	0.87[ASN][1000 genomes]
rs9396614	0.87[ASN][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
2	chr6:15889600-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:15889600-15897400	Weak transcription	Spleen	Spleen
4	chr6:15889800-15895800	Weak transcription	Fetal Lung	lung
5	chr6:15890200-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:15893000-15897200	Weak transcription	Right Atrium	heart
7	chr6:15893400-15896800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:15893600-15897000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:15894000-15895400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:15894200-15895000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:15894200-15895000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:15894200-15895000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:15894200-15895400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:15894200-15898000	Enhancers	Fetal Intestine Small	intestine
15	chr6:15894400-15895000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:15894400-15895400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:15894400-15895400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:15894400-15903000	Enhancers	Placenta	Placenta
19	chr6:15894600-15895600	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr6:15894600-15901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:15894800-15895000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:15894800-15895600	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr6:15894800-15895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:15894800-15895800	Weak transcription	Fetal Intestine Large	intestine

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