Variant report

Variant	rs4712263
Chromosome Location	chr6:15900124-15900125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15892259..15903343-chr6:16127919..16134608,26	K562	blood:
2	chr6:15898536..15902063-chr6:15905932..15909819,5	K562	blood:
3	chr6:15899286..15901094-chr6:16132281..16134729,2	K562	blood:
4	chr6:15898688..15901533-chr6:15925410..15927888,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1569590	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1569591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021900	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022462	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066399	0.81[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2066400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066401	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327925	0.87[ASN][1000 genomes]
rs4113597	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716007	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716008	0.98[ASN][1000 genomes]
rs4716009	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4716010	1.00[ASN][1000 genomes]
rs6459417	0.80[CEU][hapmap]
rs6459420	0.89[YRI][hapmap]
rs6459422	0.98[ASN][1000 genomes]
rs6459423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906138	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925815	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932456	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939072	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs760958	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760959	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs760960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7753278	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7753426	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7753453	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754469	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754613	0.95[ASN][1000 genomes]
rs879299	1.00[ASN][1000 genomes]
rs881018	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs909846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932377	1.00[CEU][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358073	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396613	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396614	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15894400-15903000	Enhancers	Placenta	Placenta
2	chr6:15894600-15901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15897200-15901000	Enhancers	GM12878-XiMat	blood
4	chr6:15897800-15901400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15897800-15912200	Weak transcription	Right Atrium	heart
6	chr6:15898000-15900600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:15898000-15900800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:15898000-15900800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:15898000-15901000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:15898000-15901000	Weak transcription	Liver	Liver
11	chr6:15898000-15901000	Weak transcription	Lung	lung
12	chr6:15898000-15901000	Weak transcription	NHEK	skin
13	chr6:15898000-15901200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:15898000-15901200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:15898000-15901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:15898000-15901400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:15898200-15900600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:15898200-15900800	Weak transcription	Adipose Nuclei	Adipose
19	chr6:15898200-15901000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:15898200-15901200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:15898400-15901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:15898400-15902000	Weak transcription	Spleen	Spleen
23	chr6:15898600-15901000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:15898600-15901400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:15898600-15901400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:15898600-15905000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:15898800-15900600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:15898800-15900800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:15898800-15901600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:15899000-15901400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:15899000-15901400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:15899000-15901400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:15899000-15901400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:15899000-15901600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:15899000-15901800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:15899000-15905200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:15899200-15900400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:15899200-15901200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:15900000-15901200	Enhancers	K562	blood

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