Variant report

Variant	rs6913590
Chromosome Location	chr6:15888200-15888201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15888062..15891334-chr6:16128088..16131243,5	K562	blood:
2	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
3	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
4	chr6:15887938..15889761-chr6:16129452..16131326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1569590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap]
rs1569591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2021900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2022462	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2066399	0.80[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2066400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2066401	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2092340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327925	0.86[ASN][1000 genomes]
rs4113597	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4712263	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716007	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4716008	1.00[ASN][1000 genomes]
rs4716009	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4716010	0.98[ASN][1000 genomes]
rs6459420	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs6459422	1.00[ASN][1000 genomes]
rs6459423	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459425	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6904123	0.81[JPT][hapmap]
rs6906138	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925815	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932456	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939072	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs726966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs760958	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs760959	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs760960	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7753278	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7753426	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7753453	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7754469	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754613	0.94[ASN][1000 genomes]
rs808361	0.80[JPT][hapmap]
rs879299	0.98[ASN][1000 genomes]
rs881018	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs909846	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296992	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs932377	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9358073	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396613	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
2	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15887000-15889800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:15887400-15888400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:15887400-15888400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15887400-15888600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:15887400-15888600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:15887400-15889000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:15887400-15889000	Enhancers	Primary B cells from cord blood	blood
10	chr6:15887400-15889000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:15887400-15889600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:15887400-15889600	Enhancers	Spleen	Spleen
13	chr6:15887400-15890000	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:15887400-15890400	Enhancers	K562	blood
15	chr6:15887600-15888200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:15887600-15888200	Enhancers	Right Atrium	heart
17	chr6:15887600-15888200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr6:15887600-15888600	Enhancers	Fetal Muscle Leg	muscle
19	chr6:15887600-15888600	Enhancers	NHEK	skin
20	chr6:15887600-15889400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:15887600-15890200	Enhancers	Adipose Nuclei	Adipose
22	chr6:15887800-15888600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr6:15887800-15888800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr6:15887800-15889200	Weak transcription	Lung	lung
25	chr6:15888000-15888200	Enhancers	Psoas Muscle	Psoas
26	chr6:15888000-15888200	Flanking Active TSS	GM12878-XiMat	blood
27	chr6:15888200-15889000	Enhancers	GM12878-XiMat	blood
28	chr6:15888200-15889400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:15888200-15889400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:15888200-15890400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:15888200-15892400	Weak transcription	Right Atrium	heart

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