Variant report

Variant	rs2066401
Chromosome Location	chr6:15880500-15880501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15876199..15886926-chr6:16128027..16136085,15	K562	blood:
2	chr6:15875079..15877964-chr6:15880093..15881980,2	K562	blood:
3	chr6:15871773..15874343-chr6:15880134..15881687,2	K562	blood:
4	chr6:15879420..15881947-chr6:15888551..15890948,2	MCF-7	breast:
5	chr6:15879446..15881923-chr6:15881943..15885281,3	K562	blood:
6	chr6:15877602..15881521-chr6:15885962..15888404,4	K562	blood:
7	chr6:15878944..15881534-chr6:16131445..16134111,2	K562	blood:
8	chr6:15877292..15880504-chr6:15885962..15890357,4	K562	blood:
9	chr6:15684844..15687441-chr6:15880155..15881679,2	K562	blood:
10	chr6:15871704..15874710-chr6:15878937..15881687,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1569591	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1569592	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2021900	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2022462	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2066399	1.00[ASN][1000 genomes]
rs2066400	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2092340	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4113597	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4712263	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4716007	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4716008	0.89[ASN][1000 genomes]
rs4716009	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4716010	0.88[ASN][1000 genomes]
rs6459417	0.82[EUR][1000 genomes]
rs6459422	0.89[ASN][1000 genomes]
rs6459423	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6459425	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6906138	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913590	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925815	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6932456	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6939072	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6940343	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs726966	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs760958	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs760959	0.81[ASN][1000 genomes]
rs760960	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7753278	0.85[ASN][1000 genomes]
rs7753426	0.85[ASN][1000 genomes]
rs7753453	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7754469	0.85[ASN][1000 genomes]
rs7754613	0.85[ASN][1000 genomes]
rs879299	0.88[ASN][1000 genomes]
rs881018	0.89[ASN][1000 genomes]
rs909846	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296992	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs932377	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9349989	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9358073	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396613	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396614	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15875600-15882400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15876400-15882200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:15876600-15882000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:15876600-15882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15879000-15880600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:15879000-15881600	Weak transcription	Lung	lung
8	chr6:15879000-15882200	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:15879200-15880800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:15879200-15880800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:15879200-15880800	Enhancers	Colon Smooth Muscle	Colon
12	chr6:15879200-15880800	Enhancers	Fetal Lung	lung
13	chr6:15879200-15880800	Enhancers	Fetal Muscle Leg	muscle
14	chr6:15879200-15881000	Enhancers	Adipose Nuclei	Adipose
15	chr6:15879200-15881000	Enhancers	NHDF-Ad	bronchial
16	chr6:15879400-15880600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:15879400-15880600	Enhancers	Fetal Intestine Large	intestine
18	chr6:15879400-15880600	Enhancers	NHLF	lung
19	chr6:15879400-15880800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:15879400-15880800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:15879400-15880800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:15879400-15880800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr6:15879400-15880800	Enhancers	Fetal Stomach	stomach
24	chr6:15879400-15880800	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:15879400-15880800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:15879400-15881000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:15879600-15880600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:15879600-15880600	Enhancers	Ovary	ovary
29	chr6:15879600-15880800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:15879600-15880800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:15879600-15880800	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:15879600-15880800	Enhancers	Fetal Kidney	kidney
33	chr6:15879600-15880800	Enhancers	Dnd41	blood
34	chr6:15879600-15881000	Enhancers	HUVEC	blood vessel
35	chr6:15879800-15880600	Flanking Active TSS	GM12878-XiMat	blood
36	chr6:15879800-15880800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:15879800-15880800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:15879800-15880800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr6:15879800-15880800	Enhancers	Thymus	Thymus
40	chr6:15879800-15881000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:15879800-15882000	Enhancers	K562	blood
42	chr6:15880000-15880600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:15880000-15880600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr6:15880000-15880600	Enhancers	Fetal Thymus	thymus
45	chr6:15880000-15880600	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr6:15880000-15880600	Enhancers	Small Intestine	intestine
47	chr6:15880000-15880600	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr6:15880000-15880800	Enhancers	Primary T cells fromperipheralblood	blood
49	chr6:15880000-15880800	Enhancers	Fetal Heart	heart
50	chr6:15880000-15880800	Enhancers	Psoas Muscle	Psoas

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